Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01913 ATGAGGAAACCTGATCTGATGGCCAACAAGGACAAAGTGAACAACATTAAGATCAAGTTGAGAAAAGGGTTGTGGTCACCTGATGAAGATGAGAAGCTCATAAGGTACATGTTGACAAATGGACAAGGGTGTTGGAGTGACATTGCCAGGAATGCTGGTCTTCAAAGGTGTGGCAAAAGTTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGACCTCAAACGTGGTGCATTCTCACCCCAAGAGGAAGATCTCATCATTCACTTGCATTCCATTCTTGGCAATAGGTGGTCTCAGATTGCAGCACGTCTCCCTGGGCGCACAGACAATGAGATAAAGAATTTCTGGAACTCCACATTGAAAAAAAGGTTGAAAACCAATACTTGTACTCCATCACTAAACAACAGCACAGACTCATCAGAGTCTAAAGATGTTTTGAGTGGGATCATGCCCTTCAATGAACATGACATCATGACCATGTGCATGGACTCCTCCTCATCAATATCATCCATGCAAGCAATGGCTTTGCCTGACCAATTTGACCCCTTTTCCATGTTTGTAAACAATAATCAGTGTGACATGACCACTAATGTTTCACCCAACTTTCCCAACATGCCTGCATCATGCATGACCCAAATTGGCATGGTGGAGGGGCATCAAGGGAATTATGGGGTATTGGAGCCAACTAAAATGGGGTTAGGACTTCCTTCCCTAGAAAGTAGAAGCATTGAAAGCAATAGTGTCCCAATTGATGTGAAAAGCCATAACAACAACCACTTCAATTATGGTTCCTTCAATAACACTGATAAGATTCAAGGCTCCAAAGTAGAGGACTTAATTGGGTTTGGAAATCATGGGCAAGGGGAAAATTTAAAAATGGGAGAGTGGGATTTGGAGAATTTGATGCAAGACATAACCTCTTTTCCTTTCCTTGAGTTTTAA 942 0.4225 MRKPDLMANKDKVNNIKIKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNTCTPSLNNSTDSSESKDVLSGIMPFNEHDIMTMCMDSSSSISSMQAMALPDQFDPFSMFVNNNQCDMTTNVSPNFPNMPASCMTQIGMVEGHQGNYGVLEPTKMGLGLPSLESRSIESNSVPIDVKSHNNNHFNYGSFNNTDKIQGSKVEDLIGFGNHGQGENLKMGEWDLENLMQDITSFPFLEF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01913 313 CDD SANT 77 120 IPR001005 -
Cca04g01913 313 Gene3D - 76 146 - -
Cca04g01913 313 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Cca04g01913 313 CDD SANT 25 69 IPR001005 -
Cca04g01913 313 Gene3D - 19 75 - -
Cca04g01913 313 PANTHER TRANSCRIPTION FACTOR MYB83 1 313 - -
Cca04g01913 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Cca04g01913 313 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Cca04g01913 313 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Cca04g01913 313 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Cca04g01913 313 SMART sant 74 122 IPR001005 -
Cca04g01913 313 SMART sant 21 71 IPR001005 -
Cca04g01913 313 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Cca04g01913 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Cca04g01913 313 PANTHER MYB DOMAIN PROTEIN 55 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01913 Cca-Chr4 36955975 36959617 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca04g01913 Myb_DNA-binding 1.3e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01913 04 36955975 36959617 Cca04g01913 04 36955975 36959617 ECH