Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01912 ATGGACAACAATGGCAGTTCCCACGAGCAAGATAACAACCGGGAAATTCCATTCTTTGTTTTCTTCAAAGACGCAAGACTTCTGTTCAAGCTGGATGCTCTTTCTCGAGAGATATTAGGGATTGCATTCCCCGCTGCCCTAGCTGTTGTTGCTGATCCCATTGCTTCTCTCATAGACACAACATTCATAGGCCACTTGGGACCAGTAGAACTTGCTGCTGCAGGAGTTTCCATTGCTTTATTCAACCAAGCTTCAAGGATTACCATATTCCCTCTAGTTAGTATTACAACTTCCTTTGTGGCTGAGGAAGATACCATTCAAAAGTTTAGCAAAGAAACTCAAGATGATAACCCTAAGCTCAACGAAGTAATAATTATTGGAGACATAGAAAATGATACACCCAAAGAGAATAATAATGAGGCTCCAGGAGCATCCAATGAAGTAACCAACAAATCAAACGATATCAAGGCGAAAAAGTTCATATCCAACGATGTGGAAAATTATGCTAAAGGGAACAAGGACATGATATGTAATGGAGATGTTACAAGTAATACTAATATAAACAAGCACAAAGTTGGAAAAAAGCGCATAGCTTCAGCAACAACCGCATTACTTTTTGGCACAATTCTTGGCCTACTTCAAACTGCAATACTTTCATTTGCAGCCAAACCTCTTTTATATGCAATGGGTCTAAAACATGATTCTCCTATGTTAAGTCCGGCGGAGAAGTACTTAACATTGAGATCGATTGGGTCACCTGCTGTTCTTCTCTCCTTGGCCATGCAAGGAATCTTTCGAGGATTCAAGGACACAACAACTCCTTTATATGTCATTGTTTCGGGGTACGCGTTCAATGTCCTATTGGACCCAATACTTATTTTTTATTTGAAATTGGGCCTCAAAGGTGCAGCTATGGCACACGTTATCTCCCAGTACATGATGGCAACCACCCTCCTTTTGTTGTTAATGAAAAGAGTACATCTCCTACCTCCAAGCTTAAAGGATTTGCAGATTTTCCGATTTCTTAAAAATGGAGGTCTATTGTTAACAAGAGTAGTATCAGTTACATTTTGTATGACCTTAGCATCATCATTGGCAGCAAGGCTAGGTTCAATTCCCATGGCTGCATTTCAACCGGGCCTACAGATCTGGTTGGCATCATCCCTTCTTGCTGATGGTTTAGCTGTTGCTGTTCAGACAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTTCAACAAGGCAATTGCAGCTGCTACAAGGACACTACAAATGAGTTTTGTTTTAGGAGTGGGGCTCTCTCTTGTAGTTGCATTTGGATTATACTTTGGAGCTGGAATATTTTCCAAAAATGCTCAAGTTGTCCAATTAATCAAAATAAGCATGCCGTTTGTTGCAGCTACTCAACCAATCAATTCATTAGCCTTCGTCTTTGATGGTGTCAACTATGGGGCTTCTGATTTTGCATATTCTGCCTACTCGTTGGTCTTGGTGTCATTAGTAAGCATTCCTATAGAAATCTTTCTCTTCAAGAGAAAACTATTCGTTGGGATTTGGATTGCACTAACCATATATATGATTCTTCGAATGATAGTTGGTATATGGAGGATGGGAACAGGGACAGGACCATGGTATTATCTTAGAAAAGGACCATGTAATCTGAGAGGCCAAGCATTGCCATAG 1680 0.4036 MDNNGSSHEQDNNREIPFFVFFKDARLLFKLDALSREILGIAFPAALAVVADPIASLIDTTFIGHLGPVELAAAGVSIALFNQASRITIFPLVSITTSFVAEEDTIQKFSKETQDDNPKLNEVIIIGDIENDTPKENNNEAPGASNEVTNKSNDIKAKKFISNDVENYAKGNKDMICNGDVTSNTNINKHKVGKKRIASATTALLFGTILGLLQTAILSFAAKPLLYAMGLKHDSPMLSPAEKYLTLRSIGSPAVLLSLAMQGIFRGFKDTTTPLYVIVSGYAFNVLLDPILIFYLKLGLKGAAMAHVISQYMMATTLLLLLMKRVHLLPPSLKDLQIFRFLKNGGLLLTRVVSVTFCMTLASSLAARLGSIPMAAFQPGLQIWLASSLLADGLAVAVQTILACSFAEKDFNKAIAAATRTLQMSFVLGVGLSLVVAFGLYFGAGIFSKNAQVVQLIKISMPFVAATQPINSLAFVFDGVNYGASDFAYSAYSLVLVSLVSIPIEIFLFKRKLFVGIWIALTIYMILRMIVGIWRMGTGTGPWYYLRKGPCNLRGQALP 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01912 559 TIGRFAM matE: MATE efflux family protein 44 518 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca04g01912 559 Pfam MatE 199 291 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca04g01912 559 Pfam MatE 353 505 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca04g01912 559 CDD MATE_DinF_like 36 538 IPR044644 -
Cca04g01912 559 PANTHER PROTEIN DETOXIFICATION 9 551 - -
Cca04g01912 559 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 9 551 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01912 Cca-Chr4 36940277 36948243 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01912 04 36940277 36948243 Cca04g01912 04 36940277 36948243 ECH