Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01911 ATGAAAACACTAACAGTCAATACTGAAGATTCTTTTTCCAGTTTGCTGGAACTTGCTTCTAACAATGACATTGAAGGTTTTAAGCTCCTTTTAGAGAAGGATTCTTCATCTATCAATGAGGTTGGACTCTGGTATGGCCGGCAAAACGGATCAAAGCAATTTGTTCTTGAGCATAGAACCCCGTTGATGGTTGCTGCTACCTATGGTAGCATCGATGTTCTGAAGCTTATACTATTGTGTCCCAAGACAGATGTAAATTTCGCCTGTGGGGCGAATAAAAGCACTGCCCTTCACTGTGCTGCTTCTGGAGGTTCTGCCGGTGCAATTGATGCTGTGAAGCTTCTTTTATCGGCAGGGGCTGATGTGAATTGCGTGGATGCAAATGGGAATCGCCCTATTGATCTAATTGTTGTACCTCCCAAGCTGCAAGGCATGAAACCCATACTTGAGGAACTTCTCTCAGATTCTTCTGATGTGTCAGTTGGTGACTTCTCTGTTCCAGTATCTGTTGATTCATCCAGTCCTATTAATTCATCCAGTCCTGGTTCTCCTGCCCATTCATCGAATGGGTTGCCATACTCTCCTTCAGGCTCACCCCCATCACCAGTGGTGTCGAAGTTTACTGATGCAGCTATTAGCTCTTTGTCAGAAAAGAAGGAATATCCCATTGATCCATCTTTGCCTGATATAAAGAACAGCATATATGCTACTGATGAGTTTAGGATGTTTTCGTTCAAGGTGAGACCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCATTTGTTCATCCAGGAGAGAATGCTCGAAGGAGAGACCCCAGGAAGTTCCACTACAGCTGTGTGCCATGCCCTGATTTTAGGAAAGGAGCCTGTAGGCGTGGAGACATGTGTGAGTATGCTCATGGGGTGTTTGAATGTTGGTTGCATCCGGCTCAATATCGGACACGCCTTTGCAAAGATGGTATTAGTTGTAATCGAAGGGTGTGTTTTTTTGCTCACACTGCTGAGGAGCTCCGTCCGTTGTATGTGTCCACTGGATCTGCTGTCCCTTCACCCCGATCATCTACCTCAGCTCCTAATGTCATGGATATGGCTGCAGCCATGAGCCTTTTGCCAGGATCGCCTTCATCAGTCTCTTCCATGTCGCCATCACACTTTGGCCAACCAATGTCCCCATCTGCAAATGGCATGTCACTCTCATCTGCTGCTTGGGCACAGCCAAATGTGCCAGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGCCGATTGAGGTCTTCTCTCAGTGCCCGTGACATTCCACCTGAAGACTTCAGCACAATGCCTGATCTTGATGGCCAGCAGCACCCTTTGAATGACTTGAGCTGTTTCTTACAGCCTCGCCCTGGTGCTGGTTCGGTGAGTCGATCTGGTCGGTCTAAAACCCTAACTCCATCAAATCTGGAAGATCTCTTTTCTGCTGAGTTTTCTTCATCTCCACGGTATTCTGATCCAGCAGCTGCTTCGGTGTTTTCCCCTACCCACAAATCAGCTGTTCTCAATCAGTTTCAACAGCTTCAAAGTATGTTATCACCTATAAATACTAACTTACTGTCTCCTAAGAATGTTGAGCATCCACTTTTACAGGCTTCCTTTGGTGTCTCTCCTTCTGGAAGGATGTCTCCAAGAAATGTTGAGCCAATTTCTCCGATGAGCAATCGGATATCTGCATTTGCTCAACGTGAGAAACAGCAGCAACAGCTACGCAGCATCAGTTCAAGGGACCTTGGTGCCAACAGTCCTGCCTCGGTTGTTGGCTCCCCCGTAAATCCTTGGTCAAAGTGGGGATCTCCTAATGGAAAAGTTGATTGGTCAGTAAATGGAGATGAGCTTGGTCGTCAGATGCGAAGATCAACCTCCTTTGAGCTTAAAAACAATGGGGAAGAGCCTGATCTATCTTGGGTCCAATCTCTGGTGAAGGAATCTCCACCTGAGATGATCAAAGAGAAGTTTGCCTCTCCTGTGCCTACTGCTGCTGCTGATGGACTGAATTCCAATTCCCAAATTGAACCTACTGATCATTCTGTCTTAGGAGCTTGGCTCGAGCAAATGCAACTGGATCAGCTTGTAGTCTAG 2121 0.4649 MKTLTVNTEDSFSSLLELASNNDIEGFKLLLEKDSSSINEVGLWYGRQNGSKQFVLEHRTPLMVAATYGSIDVLKLILLCPKTDVNFACGANKSTALHCAASGGSAGAIDAVKLLLSAGADVNCVDANGNRPIDLIVVPPKLQGMKPILEELLSDSSDVSVGDFSVPVSVDSSSPINSSSPGSPAHSSNGLPYSPSGSPPSPVVSKFTDAAISSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGISCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSAPNVMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANGMSLSSAAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDFSTMPDLDGQQHPLNDLSCFLQPRPGAGSVSRSGRSKTLTPSNLEDLFSAEFSSSPRYSDPAAASVFSPTHKSAVLNQFQQLQSMLSPINTNLLSPKNVEHPLLQASFGVSPSGRMSPRNVEPISPMSNRISAFAQREKQQQQLRSISSRDLGANSPASVVGSPVNPWSKWGSPNGKVDWSVNGDELGRQMRRSTSFELKNNGEEPDLSWVQSLVKESPPEMIKEKFASPVPTAAADGLNSNSQIEPTDHSVLGAWLEQMQLDQLVV 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01911 706 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Cca04g01911 706 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Cca04g01911 706 Gene3D - 280 342 - -
Cca04g01911 706 SMART c3hfinal6 314 337 IPR000571 GO:0046872
Cca04g01911 706 SMART c3hfinal6 279 305 IPR000571 GO:0046872
Cca04g01911 706 ProSiteProfiles Zinc finger C3H1-type profile. 284 306 IPR000571 GO:0046872
Cca04g01911 706 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Cca04g01911 706 MobiDBLite consensus disorder prediction 579 607 - -
Cca04g01911 706 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 284 304 IPR000571 GO:0046872
Cca04g01911 706 SUPERFAMILY Ankyrin repeat 9 163 IPR036770 -
Cca04g01911 706 SMART ANK_2a 57 87 IPR002110 GO:0005515
Cca04g01911 706 SMART ANK_2a 10 40 IPR002110 GO:0005515
Cca04g01911 706 SMART ANK_2a 92 124 IPR002110 GO:0005515
Cca04g01911 706 MobiDBLite consensus disorder prediction 172 201 - -
Cca04g01911 706 PANTHER UNKEMPT FAMILY MEMBER 1 704 IPR045234 -
Cca04g01911 706 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Cca04g01911 706 Gene3D - 2 176 IPR036770 -
Cca04g01911 706 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
Cca04g01911 706 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 704 - -
Cca04g01911 706 MobiDBLite consensus disorder prediction 417 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01911 Cca-Chr4 36901952 36905774 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca04g01911 Ank_2 1.6e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01660 10 29339427 29342267 Cca04g01911 04 36901952 36905774 ECH
Cca04g01911 04 36901952 36905774 Cca04g01911 04 36901952 36905774 ECH
Cca04g01911 04 36901952 36905774 Cca10g01660 10 29339427 29342267 PCT