Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01909 ATGGAGTCAGAAGGGGAAGCTGGGGCAAAGCCAGTGACAGCATTGGGTGCCCAAGTGTGCCAGATATGTGGTGATGGTGTTGGGAAGACAGTGGATGGTGAACCGTTCATTGCGTGCGATGTGTGTGCTTTCCCTGTATGCAGGCCTTGCTATGAGTATGAAAGGAAGGATGGGAATCAGTCTTGCCCCCAGTGCAAAACCCGTTACAAGAGGCACAAAGGAAGTCCTGCAACTCTCGGAGATATGGAAGAGGAtgctgctgctgctactgatggtgcCAGTGACTTCAATTATGATTCAGAAAATCAAAACCAAAAGCAGAAGATTTCAGAGCGCATGTTGAGCTGGCAATTGACATATGCGCAAGGAGAGGAGGTCAGCGCTCCAAATTATGATAAGGAAGTTTCTCACAACCACATTCCTCTTCTGACAAGTGGACAAGAGGTATCTGGTGAGTTGTCTGCAGCCTCCCCAGAAAGGCTCTCAATGGCATCTCCTGCAGTTGGTGGCGGAAAGCGTGTCCATAATCTTCCGTATTCATCTGATGTTAATCAATCTCCAAATATTAGGGTTGGTGATCCAGGATTGGGCAATGTTGCATGGAAAGAAAGAGTTGATGGTTGGAAGATGAAGCAGGACAAGAATGTTGTTCCAATGAGCACAGGCCAGGCTGCTTCTGAAAGAGGAGCTGGAGATATTGATGCCAGTACTGATGTGCTTGTCGATGATTCCTTGTTGAATGATGAAGCTCGACAGCCTCTTTCCAGGAAGGTTTCTATTCCATCATCTAGGATAAATCCGTATCGTATGGTCATTATGCTGCGGCTGGTTATCCTTTGCATTTTCTTGCATTATCGGATAACGAATCCAGTGCCCAATGCATATGCATTGTGGTTGGTATCAGTTATATGTGAGATTTGGTTTGCCATATCCTGGATATTGGATCAATTCCCTAAGTGGCTTCCTGTAAACCGTGAAACATACCTCGACAGGCTTGCACTGAGGTATGATCGAGAAGGAGAACCGTCACAACTAGCTGCTGTTGACATTTTTGTCAGTACTGTTGATCCATTAAAGGAGCCCCCACTTGTGACTGCCAATACTGTACTATCTATTCTTGCAGTTGACTACCCAGTGGATAAGGTCTCTTGCTATGTGTCTGATGATGGTGCTGCTATGTTGACATTTGAAGCCCTTGCCGAGACATCGGAATTTGCAAGGAAATGGGTTCCTTTTAGCAAGAAGTATAGCATTGAACCCCGTGCTCCTGAGTGGTACTTTACCCAAAAGATTGACTACTTGAAAGACAAGGTTCATCCATCATTTGTCAAGGATCGTAGAGCAATGAAGAGAGAATATGAGGAATTTAAAGTTCGTATTAATGGACTTGTTGCAAAGGCACAGAAAATTCCTGAAGAAGGATGGGTGATGCAAGATGGTACACCATGGCCTGGAAATAACACCAGAGACCATCCAGGAATGATCCAGGTTTTCTTGGGCCAAAGTGGAGGACTTGACACTGAGGGTAATGAACTTCCTCGGCTAGTCTATGTTTCTCGTGAAAAGCGTCCAGGGTTCCAACATCATAAGAAAGCTGGTGCCATGAATGCACTTGTTCGAGTATCTGCAGTCCTTACTAATGGACCTTTCTTATTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCCTTGAGGGAAGCAATGTGCTTTATGATGGATCCTAACCTTGGTAAACATGTTTGCTATGTTCAGTTTCCACAGAGGTTTGATGGTATTGATAGGAATGATCGATATGCCAATCGTAATACCGTTTTCTTTGATATAAACTTGAGGGGTTTGGATGGCATTCAAGGTCCTGTTTATGTGGGTACAGGATGTGTCTTCAATAGGACAGCTTTATATGGTTATGAACCTCCTCTTAAACCCAAGCATAAAAAGCCTGGGTTGTTATCATCACTCTGTGGTGGAAATCGGAAGAAGAGTTCAAAATCTAGTAAGAAAGGATCAGACAAGAAAAAATCTAGCAAGAATGTTGACCCAACTGTGCCCATTTTCAGTCTAGAGGATATAGAAGAAGGAGTGGAAGGTACTGGATTTGATGATGAGAAATCACTGCTCATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCTGTCTTTGTTGCCTCCACGCTTATGGAGAATGGTGGTGTTCCTCAGTCTGCTACTCCAGAAACTCTTCTTAAGGAGGCTATTCATGTTATCAGCTGTGGCTATGAAGATAAAACAGAATGGGGATCTGAGATAGGATGGATTTATGGTTCTGTCACAGAAGATATTCTTACTGGATTTAAGATGCATGCCCGCGGATGGAGGTCCATATACTGCATGCCTAAGCGCCCAGCATTTAAAGGTTCTGCTCCCATCAATCTTTCTGATCGTCTAAACCAAGTGCTTCGATGGGCTTTAGGTTCTGTGGAAATTCTTTTTAGCCGACACTGTCCTATCTGGTATGGTTATGGTGGAAGGCTAAAGTGGCTTGAAAGGTTTGCATATGTGAACACCACAATCTACCCAGTCACTGCCATTCCACTTCTCATGTATTGTACTTTGCCTGCTGTCTGTCTGCTGACTAACAAGTTCATTATTCCACAGATCAGTAACATTGCAAGCATATGGTTCATCTCTCTCTTTCTTTCCATCTTTGCTACTGGAATCCTGGAGATGAGGTGGAGTGGTGTTGGAATTGATGAGTGGTGGAGGAACGAACAGTTTTGGGTTATTGGTGGTGTCTCATCACATCTCTTTGCTGTGTTCCAAGGCCTGCTCAAAGTGCTTGCTGGAATCGACACCAACTTCACTGTTACCTCCAAGGCCTCAGATGAAGACGGAGACTTTGCAGAACTCTACATGTTCAAATGGACCACCCTTCTCATTCCCCCCACAACCCTTCTCATAATAAACTTGGTGGGGGTGGTTGCTGGCATTTCCTATGCCATCAACAGTGGTTACCAATCATGGGGTCCTCTCTTTGGTAAGCTTTTCTTTGCATTTTGGGTCATCATCCATCTGTACCCTTTCCTCAAAGGTCTCATGGGGCGCCAGAACAGAACACCAACCATTGTGGTGGTGTGGTCCATTCTGCTTGCATCTATTTTCTCTCTGTTGTGGGTTAGAATTGATCCTTTCACCACAAGGGTCACTGGTCCTGATGTTGAGGAGTGTGGAATTAACTGTTAA 3231 0.4407 MESEGEAGAKPVTALGAQVCQICGDGVGKTVDGEPFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPATLGDMEEDAAAATDGASDFNYDSENQNQKQKISERMLSWQLTYAQGEEVSAPNYDKEVSHNHIPLLTSGQEVSGELSAASPERLSMASPAVGGGKRVHNLPYSSDVNQSPNIRVGDPGLGNVAWKERVDGWKMKQDKNVVPMSTGQAASERGAGDIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCIFLHYRITNPVPNAYALWLVSVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFSKKYSIEPRAPEWYFTQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLLSSLCGGNRKKSSKSSKKGSDKKKSSKNVDPTVPIFSLEDIEEGVEGTGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPVTAIPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEECGINC 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01909 1076 MobiDBLite consensus disorder prediction 646 682 - -
Cca04g01909 1076 Pfam Cellulose synthase 348 1069 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca04g01909 1076 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 471 639 IPR029044 -
Cca04g01909 1076 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 5 1076 - -
Cca04g01909 1076 PANTHER CELLULOSE SYNTHASE 5 1076 - -
Cca04g01909 1076 Pfam Zinc-binding RING-finger 10 85 IPR027934 -
Cca04g01909 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Cca04g01909 1076 SUPERFAMILY Nucleotide-diphospho-sugar transferases 362 890 IPR029044 -
Cca04g01909 1076 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Cca04g01909 1076 SUPERFAMILY RING/U-box 5 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01909 Cca-Chr4 36824366 36834034 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01909 04 36824366 36834034 Cca04g01909 04 36824366 36834034 ECH
Cca04g01909 04 36824366 36834034 Cca10g01661 10 29374903 29382412 PCT