Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01907 ATGCCTGGGAAACCTGACACTGATGATTGGCGCGTAGAGCGTGGTGAGCAGATTCAGTTTCAGTCCTCTATCGACTCTAATCATCAGCCTTGGTGGCGAGGAGTGGGGGAAAATGCCTCTAAATCATCTTCAGCAGATCAATTGAATGGTTCAACGGTGAACGGTATCACGCGGTCTGAGACTAATGAAGAGTTAGCTGGTGGAGTTGATTTCAATATGCAAAGGCGGCCTATGGTTTCTCCACCACTTCTTGGAACTGGTAGGGATGTTACTAAAGAGTACCAAGACATCAAACATTCCATGTCCTCAGCCTCGTTTACCATGGACCAGCACCTTGCTCCAAATCCTCACATGGAACTTGTTGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAATATGGACAAATTTTCCCTACTTACGGCCAACAAACTATGATAAACCCTCAGTTGTATGGAATGCATCATGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCGAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCACGAGCCAAGGCTGAGCTTGAGAAAAAAGTAGTTAAGAATAGAAAGCCATACCTTCATGAATCCCGTCATCTACATGCCATGAGAAGGGCAAGAGGCAATGGGGGTCGCTTTCTTAACACAAAGAAGCTTGAAAATAACGATTGCATTGCCACTTCAGATGAAGGCAACGATATTGGTGCAAACTCCTCAATGAACACACCTAACACTCAACATTTTCTCATCAACAATGAGAATATAGGCTCATCAAGTGCATCACAGTCCACGGTTCAGGACATGCACAGAGTCCAGTGTTTCAATATTGATAATTACCATAATGTAAATGGACTCACAGCACTATACCATTCCCAAGCAAATGGAAAAAAGGAGGGAGACTACTTTGGTACAATGAGGGGCCCTAACGGGGCTTTCAAATAG 978 0.4387 MPGKPDTDDWRVERGEQIQFQSSIDSNHQPWWRGVGENASKSSSADQLNGSTVNGITRSETNEELAGGVDFNMQRRPMVSPPLLGTGRDVTKEYQDIKHSMSSASFTMDQHLAPNPHMELVGHSVVLTSPYSDAQYGQIFPTYGQQTMINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVVKNRKPYLHESRHLHAMRRARGNGGRFLNTKKLENNDCIATSDEGNDIGANSSMNTPNTQHFLINNENIGSSSASQSTVQDMHRVQCFNIDNYHNVNGLTALYHSQANGKKEGDYFGTMRGPNGAFK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01907 325 MobiDBLite consensus disorder prediction 21 55 - -
Cca04g01907 325 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700|GO:0006355
Cca04g01907 325 SMART cbf3 167 228 IPR001289 GO:0003700|GO:0006355
Cca04g01907 325 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 23 318 - -
Cca04g01907 325 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700|GO:0006355
Cca04g01907 325 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700|GO:0006355
Cca04g01907 325 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677|GO:0016602
Cca04g01907 325 Gene3D - 168 229 - -
Cca04g01907 325 MobiDBLite consensus disorder prediction 36 55 - -
Cca04g01907 325 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 23 318 IPR001289 GO:0003700|GO:0006355
Cca04g01907 325 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01907 Cca-Chr4 36740362 36746802 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca04g01907 CBFB_NFYA 9e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01907 04 36740362 36746802 Cca04g01907 04 36740362 36746802 ECH