Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01906 ATGTTAGTCACACTCCTTCACCATTTTCCACACTCGTTGTGTAAAACTCAAAGCTTTGTGGCACTTTCACCTTTCAGACACAAGGGGGGTGATGAAAAGATCAGTAGAAAGTGGGAAATTGTGAAGATAGAGCCAAAACCAAGGAGTTGTTTTACTTCAAAAGTGATTGATTTGTTGGAGAAGAGGGTGGTGAAGTTCTTCTATGATTCTTCACTGCCACATGGTTTCCTCGCTGGTAATTTTGCTCCTGTTCCCGAGACTCCTCCCACCAAAGACCTTCCTATAAAAGGGTACCTACCGGATTGCTTGAATGGGGAGTTTGTCAGAGTTGGACCTAATCCAAAGTTTGCTCCTGTAGCTGGATATCACTGGTAtttttttttctttatttctttAATGATTCATGGTTTGCGTATCAAAGATGGAGAAGCTACATATGTTTCCCGTTATGTGAGAACTTCTCGTCTTAAACAAGAAGAGTACTTTGGAGGCCCCAAATTTATGAAGATTGGAGATCTCAAGGGTCTATTTGGACTTTTAATGGTTAACATAAATATGCTGAGAAGTAAATGGAAAGTGCTGGATACTTCTTATGGAACTGGAACAGCCAACACTGCTCTTGTATATCACCATGGGAAACTTCTAGCACTCTCGGAAGCAGATAAGCCCTATGCTATTAAAGTTTTTGAAGATGGTGATTTGCAGACACTTGGCATGCTAGATTATGACAAGAGATTGGGCCACTCCTTCACTGCTCATCCAAAAGTTGACCCATATACTGGGGAGATGTTTACATTTGGCTATTCACATACACCTCCATATATCACATACAGAGTAATTTCAGAGGATGGTTATATGCATGATCCTGTACCCATAACAGTATCAGATCCCATCATGATGCATGACTTTGCTATCACAGAGAATTATGCAATATTTATGGATCTTCCTTTGATTTTTAGGCCAAAGGAAATGGTGAAGAATAAGACACTGATATTCTCATTTGATTCAACCAAGAAAGCTCGTTTTGGTGTGCTACCTCGATATGCTAAGGACGAAAAACATATAAGATGGTTTGAGCTGCCAAACTGCTTCATATTCCACAATGCCAATGCTTGGGAGGAAGAAGATGAAGTCGTTTTGATCACATGCCGTGTTCAGAATCCAAATTTGGACAATGTCAGCGGGGCAGTCAAAGAAAAGCTTGAAAATTTTGCAAATGAGCTTTATGAAATGAGATTTAACATGAAAACCGGTGAAGCTTCTCAAAAGAAACTATCAGCATCTGCTTTAGATTTTCCTAGGGTGAATGAAAGCTACACTGGCAGGAAGCAGCGATATGTATATGGAACCACATTAGACAGTATCGCAAAAGTTACTGGAATTATAAAATTTGATTTGCATGCCAAACCGGATCATGGAAAAACAAAGCTTGAAGTTGGAGGAAATGTTCAGGGTCTCTACGACTTGGGACCGGGGAAGTTCGGCTCCGAAGCTGTTTATGTCCCACGTGTACCTGGCACCGATTCTGAAGAAGATGATGGATACTTGATTTTCTTTGTACATGATGAAAATATTGGAAAATCATTTGTGCATGTCATCGATGCAAAAACAATGTCATCAGATCCTGTTGCGGTTGTTGAATTGCCACATAGAGTTCCATATGGTTTCCATGCCTTCTTTGTGACAGAGGAACAACTGCAAGAGCAGGAGAAACTGTAA 1719 0.4008 MLVTLLHHFPHSLCKTQSFVALSPFRHKGGDEKISRKWEIVKIEPKPRSCFTSKVIDLLEKRVVKFFYDSSLPHGFLAGNFAPVPETPPTKDLPIKGYLPDCLNGEFVRVGPNPKFAPVAGYHWYFFFFISLMIHGLRIKDGEATYVSRYVRTSRLKQEEYFGGPKFMKIGDLKGLFGLLMVNINMLRSKWKVLDTSYGTGTANTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDKRLGHSFTAHPKVDPYTGEMFTFGYSHTPPYITYRVISEDGYMHDPVPITVSDPIMMHDFAITENYAIFMDLPLIFRPKEMVKNKTLIFSFDSTKKARFGVLPRYAKDEKHIRWFELPNCFIFHNANAWEEEDEVVLITCRVQNPNLDNVSGAVKEKLENFANELYEMRFNMKTGEASQKKLSASALDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAKPDHGKTKLEVGGNVQGLYDLGPGKFGSEAVYVPRVPGTDSEEDDGYLIFFVHDENIGKSFVHVIDAKTMSSDPVAVVELPHRVPYGFHAFFVTEEQLQEQEKL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01906 572 Pfam Retinal pigment epithelial membrane protein 81 561 IPR004294 GO:0016702
Cca04g01906 572 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 1-3 31 568 - -
Cca04g01906 572 PANTHER BETA-CAROTENE DIOXYGENASE 31 568 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01906 Cca-Chr4 36667227 36720004 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01906 04 36667227 36720004 Cca04g01906 04 36667227 36720004 ECH