Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01904 ATGTACATCAAGGAGATATGCTTGGAAGGGTTCAAGTCGTACGCGAGCCGCACCGTGGTTCCGGGGTTCGACCCCTTCTTCAACGCCATCACCGGCTTGAACGGTTCCGGCAAGTCCAACATCCTCGACTCCATCTGCTTCGTCCTCGGCATCACCAACTTGCAGCAGGTTAGGGCTTCCAACCTCCAGGAGCTCGTCTACAAGCAGGGCCAAGCCGGAATCACCAAAGCCACCGTCTCCATCGTCTTCGACAATTCCGATAGCTCCAGAAGCCCTCTCGGATACGAATCCCATTCCGAAATCACAGTCACAAGACAGATTGTGGTTGGCGGAAGGAACAGATATAATATTAATGGGAAGCTTGCACAGCCAAGTCAAGTTCAGAACCTTTTTCATTCAGTGCAGCTAAATGTTAATAATCCGCATTTCCTTATAATGCAAGGGCGCATCACTAAGGTTTTGAATATGAAGCCACCAGAGATATTGTCTATGCTTGAGGAAGCTGCAGGGACGAGAATGTATGAGACAAAGAAAGAGGGTGCTTTAAAAACACTTGAGAAGAAGCAGAGCAAGGTCGATGAGATTAACAAGCTTCTTGACCAGGAGATATTGCCTGCTCTGGAGAAGTTAAGGAAAGAAAAGACACAGTACATGCAATGGGCAAATGGCAATGCCGAGTTAGACAGGCTGAGAAGATTTTGTATTGCTTATGAGTATGTTCAAGCTGAGAGGATTAAAGACAATGCTGCTTCCGAGGTGGAACAGGTGAAAGCCAAGATAGCTGAGATTGATGACATTGCTAATACAAATCAGGTGGAAATAAAGGAAATGGAGACCAAAATAGCTCAGTTGACTGCAGAAAAAGAAGCAAACATGGGTGGAGAAATGAAATCTCTGTCAGAGAAGGCAGATGCACTTTCCCAGAATCTTGTGAAGGAAACCTCTGTACTAAATAATAAGGAAGACACTTTGAGGAGCGAAGAAGCCAACAAAGCAAATATTATTAAAAATGTTGAAGAATTGAAGCAATCTGTAAAAGAGAAGGCCTCTGCTGTTAAAAAGGCTGAAGATGGGGCAGCAGATCTGAAAAATAAAGTTGATGAGCTCACAAAGAATCTAGAGGAGAATGAAAAAGAATACCAGGGTGTTTTAGCTGGCAAGAGCAGTGGTAATGAGGAGAAATGCTTAGAGGATCAACTAAGGGATGCAAAGGTAGCAGTTGGAAGTGCTGAAACTGAACTGAAACAGCTGAAAGCCAAGATTAGCCATTGTGAAAAGGAACTGAAGGAGAAAACAAAACAATTAAGGTCAAAACGTGAAGAAGCTAATGCTGTGGAAAATGAGCTCAACAGTAGACAAAAAGATGTGGAGAATGTTAGAATGGAGCTGGAGTCTCTTTCTTATAAAGAGGGTGAGATGGAAGCTTTACAAAAGGAGCGTATGATTGAGATGGATTGTGTGCAAAAGTTGAAGGATGAAATACGCAACATTTCAGCATACTTGGCAAATGTTGAATTTACATACCGTGATCCTGTCAAGAACTTTGATAGGTCAAAGGTGAAAGGTGTTGTTGCAAAACTCATCAAAGTAAAGGATAGGTCCACAATGACTGCCCTAGAGGTTACAGCTGGTGGAAAGTTGTATAATGTTGTTGTTGACACAGAAAGTACTGGAAAGCAACTACTACAGAATGGCAATCTTAGAAGAAGAGTGACAATTATACCATTGAACAAAATACAATCCTATACTGTTCCCTCCAGAGTTCAACAAGCTGCTGTCAGATTGGTGGGCAAGGGCAATGCTGAAGTAGCTCTCTCTTTGGTTGGTTATGAAGAAGAATTGAAGAGTGCAATGGAATATGTGTTTGGTTCAACCTTTGTTTGCAAAACCATTGATGCTGCGAAGGAGGTAGCATTTAATCGGGAGATTCACACCACAAGTGTAACTCTTGAAGGAGATATATTTCAGCCAAGTGGTCTTCTGACTGGTGGAAGCCGGAAAGGAAGTGGCGATCTTTTGGGGCAACTTCACGCTTTGGCTGAGGCTGAGTCAAAACTTTCAGTGCATCAAAAAAGGTTGTCAGAGATCGAGGAAAAGATCTCAAAGCTCCTTCCACTTCAGAAAAAATTTGTTGATCTCAAAGCACAATTGGAACTGAAGTCATATGACCTTTCATTGTTTCAGAGCAGAGCTGAGCAAAATGAGCATCATAAGCTTGGAGAATTAGTGAAGAAGATTGAGCAAGAGCTTAATGAAGCAAAATCTACAAACAAGGACAAGCAACTTTTATATGAGGACTGCGTTAAAACTGTTTCATCTCTCGAGAAATCAATCAAAGAACATGACAATAACAGAGAGAGTAGGCTAAAGGGCTTGGAGAAAAAGATAAAGTCAATCAAATCTCAAATGCAGTCATCTTTAAAAGATCTGAAGGGACATGATAGTGAAAAGGAGAGGCTTGTAATGGAAATGGAAGCTGTTGTCCAGGAGCAAGCATCGTTGGAGAATCAATTAGCATCATTGGGAACACTAATTAGTAATCTTGCCTCTGAAGTAGAAGAACAACAAACCACAGTTGTTGCTGCAAGAAATAATCTTGATCAAGTTCAGTCACAGCTGAAATCAGTTCGCCAGAAAATGAAGGAATGTGATAAGGAAATCAGTGCTATTATTAAAGAGCAGCAAAAGCTTGAACATAAGATTAGTGAGAGTAATCTTGAAAGGAAGAGGATGGAAAATGAGGTAAAACGGATGGAGATGGAACAGAAAGACTGTTCTGTGCGAGTAGATAAATTAATAGAGAAGCATGCATGGATTGCTTCTGAAAAACAGTTGTTTGGCAGAAGTGGCACTGATTATGATTTTTCTTCCCGTGATCCTAGTAAAGCAAGGGAAGAACTTGAGAAACTTCAGGCTGAACAATCTGGGCTTGAGAAAAGGGTGAATAAGAAAGTAATGGCAATGTTTGAGAAGGCAGAAGACGAGTACAATGATTTGATGTCCAAAAAAAACATAATTGAGAATGACAAGTCTAAAATCAAGAAGGTGATTGAAGAGCTAGATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGGTCAAAGTGAATAATGACTTTGGATCCATCTTTTCTACGCTACTGCCGGGAACAATGGCCAAGTTAGAACCTCCAGAAGGATGCAGCTTCCTTGATGGTCTTGAGGTTCGTGTTGCATTTGGAAGTGTGTGGAAGCAGTCATTGTCTGAATTAAGTGGAGGTCAGCGATCATTGCTCGCACTTTCTCTGATTCTGGCGCTGCTTCTGTTCAAACCTGCTCCACTATACATTCTTGATGAGGTTGATGCTGCTCTTGATTTGAGTCACACGCAAAACATCGGGAGGATGATAAAGGCTCACTTTCCACACTCTCAGTTTATTGTGGTTTCACTGAAGGAAGGCATGTTCAATAACGCAAATGTTCTTTTCCGGACAAAATTTGTGGATGGTGTTTCAACTGTTCAGCGAACTGTAGCAACAGCTAAACAAAGCAAGTAA 3534 0.4157 MYIKEICLEGFKSYASRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDSSRSPLGYESHSEITVTRQIVVGGRNRYNINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEGALKTLEKKQSKVDEINKLLDQEILPALEKLRKEKTQYMQWANGNAELDRLRRFCIAYEYVQAERIKDNAASEVEQVKAKIAEIDDIANTNQVEIKEMETKIAQLTAEKEANMGGEMKSLSEKADALSQNLVKETSVLNNKEDTLRSEEANKANIIKNVEELKQSVKEKASAVKKAEDGAADLKNKVDELTKNLEENEKEYQGVLAGKSSGNEEKCLEDQLRDAKVAVGSAETELKQLKAKISHCEKELKEKTKQLRSKREEANAVENELNSRQKDVENVRMELESLSYKEGEMEALQKERMIEMDCVQKLKDEIRNISAYLANVEFTYRDPVKNFDRSKVKGVVAKLIKVKDRSTMTALEVTAGGKLYNVVVDTESTGKQLLQNGNLRRRVTIIPLNKIQSYTVPSRVQQAAVRLVGKGNAEVALSLVGYEEELKSAMEYVFGSTFVCKTIDAAKEVAFNREIHTTSVTLEGDIFQPSGLLTGGSRKGSGDLLGQLHALAEAESKLSVHQKRLSEIEEKISKLLPLQKKFVDLKAQLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQELNEAKSTNKDKQLLYEDCVKTVSSLEKSIKEHDNNRESRLKGLEKKIKSIKSQMQSSLKDLKGHDSEKERLVMEMEAVVQEQASLENQLASLGTLISNLASEVEEQQTTVVAARNNLDQVQSQLKSVRQKMKECDKEISAIIKEQQKLEHKISESNLERKRMENEVKRMEMEQKDCSVRVDKLIEKHAWIASEKQLFGRSGTDYDFSSRDPSKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWVKVNNDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVATAKQSK 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01904 1177 Coils Coil 736 763 - -
Cca04g01904 1177 Coils Coil 789 809 - -
Cca04g01904 1177 Gene3D - 590 666 - -
Cca04g01904 1177 Coils Coil 817 837 - -
Cca04g01904 1177 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Cca04g01904 1177 Coils Coil 239 287 - -
Cca04g01904 1177 Coils Coil 982 1026 - -
Cca04g01904 1177 Pfam RecF/RecN/SMC N terminal domain 2 1161 IPR003395 -
Cca04g01904 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1161 IPR027417 -
Cca04g01904 1177 Coils Coil 845 928 - -
Cca04g01904 1177 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 1 1171 - -
Cca04g01904 1177 SUPERFAMILY Smc hinge domain 486 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Cca04g01904 1177 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Cca04g01904 1177 Gene3D - 785 996 - -
Cca04g01904 1177 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Cca04g01904 1177 Coils Coil 317 379 - -
Cca04g01904 1177 PIRSF SMC 1 1156 IPR024704 GO:0005524|GO:0016887
Cca04g01904 1177 Gene3D - 1 202 IPR027417 -
Cca04g01904 1177 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 1 1171 - -
Cca04g01904 1177 Coils Coil 679 699 - -
Cca04g01904 1177 Coils Coil 400 462 - -
Cca04g01904 1177 Gene3D - 426 589 - -
Cca04g01904 1177 Gene3D - 997 1175 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01904 Cca-Chr4 36567500 36579119 Dispersed