Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01903 ATGAGTTATTATGGTGAAGAAAATGATAGAGTGAGTGGTCTTTATGAGGTTTCAGTGAGAGGTAGTGTGTGCGAGTTAGAGTCTCTAATAGTGCGAGACCCTCTTATCTTACACAAGCTTTCGTTGAGAAGCTTCACCGAAACTCCCTTACACGTCTCAGCTTTACTTGGTCACTTTGACTTCACCAAGTGTCTTCTCTCTCACAAACCTCAACTGGCCCTTGAGTTAGACCACTCCAAACGCACCCCTCTTCATCTGGCTTCAGCTGAGGGCCATGCAGAGATTGTGCACGTGCTGTTGCAAGCGTGTGAACACGCGTGCTTGATGAGTGACCAAGATGGGAGAATCCCTCTCCACTATGCAGCAATGAGAGGACGAAGAGAGGTGGCAAGAGAGTTGATTCGAGCCAAGCCTGAGTCAGTGATGGTGCTTGATGGCTCGGGAAAAACTATGTTGCACCTTTGTGTTGAACATAATCACTTGGACACCCTCAAAACATTAGTGCAAGAGGGCCATGTCGGCCACAATTTTCTAAACTTTGGAGACTTCAATCGTGGGAATACCCTCCTCCATTTGGCTGTTATGTTCAAGCAAATTCAGACCGTAAGGTACTTACTTTCGATACCCAAAATAAGAGAAGAAGGGAATATTAAGAACAATATGGGTTATACTGCTTTGGACATGCTAGAGCACGGTACAAGAGACTTTAAAAGTCTTCAAATGCAACTCATGTTGATGGACGCTGGCATCATCAAGAACAATGAACATAATAACCAAGTAGACCACACACTATCAACAACCATAACTGTTGTTCCACCAATGACAATAGCTGATCCAAATGCAAAGTGTTGGAGCAAGTTTTTGAAGGGTATGAATAAGTTCTTACAACATAAGAGTGGTAGGTTGGAAGAAATGAGAGGCATGCTGAGTTTGGTAGCTACAATGATCTCAAGCATGACCTTTAATGTTGTGATGAACCCACCAGGTGGTCATATGAGCCCAGCAACATTTTATATGACACGAGAAATAACTACGAGTTTCATAACGTACAACACTATTGCTTTCATTGCATCGCTTAGTGTTACTCTCTTACTTGTGAGTGGTGTCCCCTTAAAGAACGAAGTCACCATGGGGATATTATCAATAGGCACAGgtgaaactcatcaagatattgatgatgttggtgacgagacttag 1197 0.4169 MSYYGEENDRVSGLYEVSVRGSVCELESLIVRDPLILHKLSLRSFTETPLHVSALLGHFDFTKCLLSHKPQLALELDHSKRTPLHLASAEGHAEIVHVLLQACEHACLMSDQDGRIPLHYAAMRGRREVARELIRAKPESVMVLDGSGKTMLHLCVEHNHLDTLKTLVQEGHVGHNFLNFGDFNRGNTLLHLAVMFKQIQTVRYLLSIPKIREEGNIKNNMGYTALDMLEHGTRDFKSLQMQLMLMDAGIIKNNEHNNQVDHTLSTTITVVPPMTIADPNAKCWSKFLKGMNKFLQHKSGRLEEMRGMLSLVATMISSMTFNVVMNPPGGHMSPATFYMTREITTSFITYNTIAFIASLSVTLLLVSGVPLKNEVTMGILSIGTGETHQDIDDVGDET 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01903 398 Gene3D - 10 243 IPR036770 -
Cca04g01903 398 ProSiteProfiles Ankyrin repeat profile. 147 171 IPR002110 GO:0005515
Cca04g01903 398 SMART ANK_2a 45 74 IPR002110 GO:0005515
Cca04g01903 398 SMART ANK_2a 79 109 IPR002110 GO:0005515
Cca04g01903 398 SMART ANK_2a 113 143 IPR002110 GO:0005515
Cca04g01903 398 SMART ANK_2a 185 214 IPR002110 GO:0005515
Cca04g01903 398 SMART ANK_2a 147 177 IPR002110 GO:0005515
Cca04g01903 398 Pfam Ankyrin repeats (3 copies) 111 171 IPR002110 GO:0005515
Cca04g01903 398 Pfam Ankyrin repeats (3 copies) 43 101 IPR002110 GO:0005515
Cca04g01903 398 ProSiteProfiles Ankyrin repeat region circular profile. 147 171 - -
Cca04g01903 398 Pfam Ankyrin repeat 186 206 IPR002110 GO:0005515
Cca04g01903 398 ProSiteProfiles Ankyrin repeat profile. 113 135 IPR002110 GO:0005515
Cca04g01903 398 PANTHER HOMEOBOX PROTEIN WARIAI 15 368 - -
Cca04g01903 398 Pfam Domain of unknown function 301 369 IPR026961 -
Cca04g01903 398 ProSiteProfiles Ankyrin repeat region circular profile. 113 135 - -
Cca04g01903 398 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 15 368 - -
Cca04g01903 398 SUPERFAMILY Ankyrin repeat 43 228 IPR036770 -
Cca04g01903 398 ProSiteProfiles Ankyrin repeat profile. 79 101 IPR002110 GO:0005515
Cca04g01903 398 ProSiteProfiles Ankyrin repeat region circular profile. 79 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01903 Cca-Chr4 36550255 36554934 Transposed