Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01901 ATGCTTTCACTCTGCACTCTCAAAGCCATTCCCTCTCTTCACTCGCATAGTTATCGATGGAGTTTTCTGTTGATGTGTTGGCAGCTAAACGCCCCCGTCCAGACGGATTTTCCCCTGGCCCTGACAGAGACAAAAGACAGAAGTTATCACATGTTGTTGAGTACGGGAATCCCCGAACAATTACTCATACTTGTTAATCAAATGTTGAAAGTGGAAATGGACCACAATGAAGAAGCTTTTAAGTTTGAAAATAAAAAAGTTGCTGGTTTGATACATCAAAATGTCGAGACTGAAAAGGGTGTTGATGCAGCACCATATCCTATTGTGATTATTGATTCAGATGAGGAAGATGATAGAGATGAAAAATCTATTATTCCATTTCATGAAGTTTTACATGAGAAAGATGATAGAGATAAAAATGCTGTTGTTCCATTTATTGAAGTTTTGGACGAGAAAGATGGTAGAGATGAAAAATCTGTTGTACCATTTATTGAAGTTTTAGATGCGAAAGATGATAGAGATAAAAAATTTATTGTTCCATTTCATGAAGTTTTAGAAGAGGAAGATGATAGAGATAAAAAATCTATTGTTCCATTTCATGAAGTTGTGTTGCCGAGATTAGTTGCATCGTCTCATGCGTTGAAGAGGATTGGGTACCACACTCCCATTCCATACCACGGGGAAAGTGAAGATCTAAAAACTGAGCCAAGTATGGCTGGTAAAGGTAACTCTAGGGGCGATAAAGGTGTTTATATTGGTGTACAAGAGCAAgaggatcatcatgttgatactgaagatgatgatgatCTACAAGATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAAGAAGTTTCCGTGAATCCTCCGCCAGATAAAGAAGTAAAAGAAGATGAAAACCCTCTGCCGGATGAAGAAGTAAATAAATATGAGGACTGTGATCATTCTTATGTTTTAAAAGACGATCTTGGTTATGTTTGTCGCGTTTGTGGCATTATTGACCGAGGAATTGAAACCATATTCGAGTTCCAGTACAAGGTTAAACGGAGCACAAGAACTTATGCGTCTGATTCACGGAATACTAAAGAAAAAGGAGATGTATTTGGAATAAATGTTGCTGAAGATGAGCTTATAGTAACTGAAATATCAGCGCATCCTAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGCGGGTGACCATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGGAAAACATTTATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCTAACGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAACATGGCAAGTGGAGGACATACCTCTTTATGACCTTTACTCAGTGAAGGCTGATAGTAGAAGTCAACAACTAGTAGTGTTGAAGAAATGGATGGAGCAGAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGACCAACAGTTCATCATCATCTTGCCAAGAGATTTTACTCAAGGTTCCTTCAATTCTTATTTTAGACGAGGGACACAATCCAAGGAATGAAAACACAGATATGGTACAGTCCCTTGCAAAAGTTCAAACGCCTAGAAAAGTTGTACTATCAGGAACCCTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTTTAAATCTTGTTCGGCCAAAATTTTTGAAGATGGAATCATCTAGGCCTATCGTGAGGCGCATTCAAAGTAGAGTTCATGTACAGGGTGTGAGAAGCTTCTATGATTTAGTTGAAAACACTTTGCAGAAGGACACAGATTTTAAAAGGAAAGTAGCTGTTATACAAGATTTGCGCGAGATGACGAGCAAGGTACTTCACTACTATAAAGGAGATTTTCTTGAAGAGCTTCCTGGTCTTGTTGATTTTACTGTGGTGCTCACTCTTAGCCCTAGACAGAAGTCTGAAATTGAGAAATTAAAAAAGTTATGTAGAAAGTTCAAGTTAAGTTCTATAGGCAGTGCTGTCTATCTGCATCCTAAACTGAAATCACTTGCAGAAAAATGTAGTGAAAATTCTATATCTGAAAACATAATTGATGATCTCATTGAGACGTTGGCTTTGAGAGATGGTGTGAAGTCCAAATTCTTTTGGAACATGGTAAATTTGTGTGAATCAGCTGGCGAGAAACTTCTAGTATTTAGTCAATACTTGTTACCTTTGAAATATTTAGAAAGGTTAATCATGAAATGGAAAGGTTGGAGTCTAGGAAGAGAAATATTTGTAATCTCAGGAGAATCAAGCCCTGAGCACCGAGAATGGTCCATGGAAAAATTTAACAATTCTCCTGATGCCAAAGTCTTCTTTGGCTCGATCAAGGCTTGTGGAGAGGGCATATCATTGGTCGGGGCATCCCGCATTATTATTGTGGACGTTCATCTCAATCCTTCGGTTACTCGCCAAGCTATTGGTCGTGCATTCAGACCGGGTCAGAAGAAGAAAGTCTTCGTGTATCGATTGGTATCTGCTGATTCCCCTGAAGAGGAAGATCACACTACTTGTTTCAAGAAGGATTTAATTTCAAAAATGTGGTTTGAATGGAACCAGTACTGTGGTGATCGAGCTTTTGAAGTTGAAGTAGTTGGTGTGAAAGAATGTGGCGATCTCTTTTTTGAAAGTCCATTGTTAGGTGAAGATGTCAAGGCTCTGTATAAAAGGTAG 2778 0.3819 MLSLCTLKAIPSLHSHSYRWSFLLMCWQLNAPVQTDFPLALTETKDRSYHMLLSTGIPEQLLILVNQMLKVEMDHNEEAFKFENKKVAGLIHQNVETEKGVDAAPYPIVIIDSDEEDDRDEKSIIPFHEVLHEKDDRDKNAVVPFIEVLDEKDGRDEKSVVPFIEVLDAKDDRDKKFIVPFHEVLEEEDDRDKKSIVPFHEVVLPRLVASSHALKRIGYHTPIPYHGESEDLKTEPSMAGKGNSRGDKGVYIGVQEQEDHHVDTEDDDDLQDIWKEMSMAIECSKEVSVNPPPDKEVKEDENPLPDEEVNKYEDCDHSYVLKDDLGYVCRVCGIIDRGIETIFEFQYKVKRSTRTYASDSRNTKEKGDVFGINVAEDELIVTEISAHPRHMKQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYSVKADSRSQQLVVLKKWMEQKSILFLGYKQFSSIVCDNGTNSSSSSCQEILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMESSRPIVRRIQSRVHVQGVRSFYDLVENTLQKDTDFKRKVAVIQDLREMTSKVLHYYKGDFLEELPGLVDFTVVLTLSPRQKSEIEKLKKLCRKFKLSSIGSAVYLHPKLKSLAEKCSENSISENIIDDLIETLALRDGVKSKFFWNMVNLCESAGEKLLVFSQYLLPLKYLERLIMKWKGWSLGREIFVISGESSPEHREWSMEKFNNSPDAKVFFGSIKACGEGISLVGASRIIIVDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLVSADSPEEEDHTTCFKKDLISKMWFEWNQYCGDRAFEVEVVGVKECGDLFFESPLLGEDVKALYKR 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01901 925 MobiDBLite consensus disorder prediction 287 309 - -
Cca04g01901 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 886 IPR027417 -
Cca04g01901 925 Pfam SNF2-related domain 414 625 IPR000330 GO:0005524|GO:0140658
Cca04g01901 925 Gene3D - 657 897 IPR027417 -
Cca04g01901 925 SMART helicmild6 761 849 IPR001650 -
Cca04g01901 925 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 408 587 IPR014001 -
Cca04g01901 925 MobiDBLite consensus disorder prediction 289 309 - -
Cca04g01901 925 Gene3D - 362 614 IPR038718 -
Cca04g01901 925 MobiDBLite consensus disorder prediction 227 246 - -
Cca04g01901 925 Pfam Helicase conserved C-terminal domain 743 848 IPR001650 -
Cca04g01901 925 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 738 901 IPR001650 -
Cca04g01901 925 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 83 925 IPR044567 GO:0080188
Cca04g01901 925 SMART ultradead3 390 600 IPR014001 -
Cca04g01901 925 CDD SF2_C_SNF 738 860 - -
Cca04g01901 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 609 IPR027417 -
Cca04g01901 925 PANTHER PROTEIN CHROMATIN REMODELING 35 83 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01901 Cca-Chr4 36521610 36528147 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca04g01901 SNF2_N 1.4e-20 CL0023