Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01900 ATGGAGTCCTCTGTTGATGTGTTAGCTGCTAAACGCTCCCTTCCAAACGGATTTTCCCCTAGCCCTGACAGACACAAAAGACTGAAGTTTTCAGGTGATAGCCTGCCATTCCCAGCACATGATAAGAATTCAAATGTTGTTGAATACAGCAATCCATATGCAATTTCATATGTTCTGGATCGTTTAGAGAGTGGAAAATTTGGGAGTGTCACAAAGGACATAGAGGCCCTTACGGCCCGAAAAATGCAAATACTGGGCCCTTATTTTGCAAAATATCCTGTACTTGTTAATCAATTATTGAAAGTGGTAACAAACAACGATGAAGAAACTCCTAAGTTGGAAAATCAACAAGTTACTGGTTTGACAAATCAAAATGTCATATATTTGGAGGGGGAGCACACTAAGAAGGATGTTCCTGCAGCGCCAAATCCTGTTGTGATTATTGATTCAGATGAGGAAGAGGATAGAGATCAAAAATCTGTTGTTCCATATCATGAAGTTGTTTTGCCAATGCCGAGACTAGTTGCTCCATCTCCTGCATTGAAGATGATTGGGTATGACACTCTCATTCCTTACCCGGGAGAAAGCAAAGATCTAAAAATTGGGACAAGTATGATTGGTAAAGTTATGACTGGTAGAGGTAATGCTAGGAGCGATAAAGGTGCTTATATTGGTGTACAGgaggatgaagatcaggttgaaactgaagatgaTGGTCTAGAAGATATTTGGAAGGAGATGTCAATGGCAATAGAAACTTCCAAAGATATTTCTGAGAATCTTCCGTCAGATGAAGAAGAGAAAGAAGATGATGATTGTGATCACTCTTTTGTTTTGAAAGACGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTCATTGACCGAGGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGGAGCACAAGAACTTATGCGTCTGATTCATGGAATAACAAAGAAAAAAGAGATATATTTGGAATTAATGTTGTTGAAGATGGCCTTGTATTAACTGAATTATCAGCGCATCCTAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGCGGGTGACCATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGATCTGGAAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGAAAGTATCCTAGTGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAGAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCTCTTTATGACCTTTACACAGTGAAGGCAGATAGTAGAAGTCAACAACTAGAAGTGTTGAAGCAATGGATGGAGCATAAAAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGTCCAACAGTTTATCATTATCTTGCCAAGAGATTTTACTCAAGGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCAAGGAATGAAAACACAGATATGGTACAGTCCCTTGCAAAAGTTCAAACGCCTAGAAAAGTTGTACTGTCAGGAACCCTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTTTAAATCTTGTTCGGCCTAAATTTTTGAAGATGGAAACATCTAGGCCTATTGTCAGGCGCATTCATAGTAGAGTTCATATACCAGGTGTGAGAAGCTTCTATGATTTAGTTGAAAACACTTTGCAAAAGGATAAGGATTTTAAAAGGAAAATAGCTGTTATACAAGATTTGCGTGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACTGTGGTGCTCACTCTTAACCCTAGACAGAAGCCTGACGTTGATAAATTAAAAAGGCTATCTAGAAAGTTCAAGATAAGTTCTGTAGGCAGTGCTGTCTATCTGCATCCTAAACTGAAACCACTAGCAGAAAAATGTGAAAATTCTATATCTGATAATATAATGGATGATTTGATAGAGAAACTAGATATGAGAGATGGTGTGAAGTCAAAATTCTATTACAACATGCTAAACATGTGTGAATCAGCAGGGGAGAAGCTTCTGGTTTTCAGTCAATATCTGTTACCTTTGAAATATTTAGAAAGGTTGACTATGAAATGGAAAGGTTGGAGTCTTGGAAGAGAAATTTTTGTAATCTCAGGAGAATCAAGCTCTGAGCAACGAGAATGGTCAATGGAAAAATTTAACAATTCTCCTGACGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGCATATCATTGGTTGGGGCATCCCGCATAATTATTTTGGACGTTCATCTCAATCCTTCAGTAACTCGCCAAGCTATTGGTCGTGCATTCAGACCGGGCCAGAAGAAGAAAGTCTTCGTGTATCGATTGGTAGCTGCTGGTTCTCCTGAAGAGGAAGATCACACTACTTGTTTCAAGAAGGAATTAATATCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGCGATCGAGCTTTTGAAGTTGAGGCTGTTGAGGTGAATGAGTGTGGTGATCAATTTCTTGAAAGTCCACTGTTACGGGAGGATGTAAAAGCTTTGTATAAAAGGTAG 2649 0.3854 MESSVDVLAAKRSLPNGFSPSPDRHKRLKFSGDSLPFPAHDKNSNVVEYSNPYAISYVLDRLESGKFGSVTKDIEALTARKMQILGPYFAKYPVLVNQLLKVVTNNDEETPKLENQQVTGLTNQNVIYLEGEHTKKDVPAAPNPVVIIDSDEEEDRDQKSVVPYHEVVLPMPRLVAPSPALKMIGYDTLIPYPGESKDLKIGTSMIGKVMTGRGNARSDKGAYIGVQEDEDQVETEDDGLEDIWKEMSMAIETSKDISENLPSDEEEKEDDDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYASDSWNNKEKRDIFGINVVEDGLVLTELSAHPRHMKQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPSARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVKADSRSQQLEVLKQWMEHKSILFLGYKQFSSIVCDNGSNSLSLSCQEILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSRPIVRRIHSRVHIPGVRSFYDLVENTLQKDKDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLTLNPRQKPDVDKLKRLSRKFKISSVGSAVYLHPKLKPLAEKCENSISDNIMDDLIEKLDMRDGVKSKFYYNMLNMCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLGREIFVISGESSSEQREWSMEKFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLVAAGSPEEEDHTTCFKKELISKMWFEWNEYCGDRAFEVEAVEVNECGDQFLESPLLREDVKALYKR 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01900 882 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 39 882 IPR044567 GO:0080188
Cca04g01900 882 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 674 858 IPR001650 -
Cca04g01900 882 SMART ultradead3 348 558 IPR014001 -
Cca04g01900 882 PANTHER PROTEIN CHROMATIN REMODELING 35 39 882 - -
Cca04g01900 882 CDD SF2_C_SNF 695 817 - -
Cca04g01900 882 Gene3D - 619 865 IPR027417 -
Cca04g01900 882 SMART helicmild6 721 806 IPR001650 -
Cca04g01900 882 Pfam Helicase conserved C-terminal domain 695 805 IPR001650 -
Cca04g01900 882 Pfam SNF2-related domain 372 577 IPR000330 GO:0005524|GO:0140658
Cca04g01900 882 Gene3D - 323 564 IPR038718 -
Cca04g01900 882 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 366 545 IPR014001 -
Cca04g01900 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 547 IPR027417 -
Cca04g01900 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 844 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01900 Cca-Chr4 36477857 36485902 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca04g01900 SNF2_N 1.6e-19 CL0023