Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01893 ATGGTGAAGGACACTGCCTACTATGACATGTTAGATGTCAATGTTGATGCATCTGCTGCAGAGATCAAGAAGGCTTATTATGTCAAGGCAAGAATAGTTCACCCTGATAAAAATCATGGGGATCCTAAGGCTGCAGAAAATTTTCAGAAACTTGGTGAGGCTTACCAGGTTTTAAGTGATCCTGGGAAGCGTGAAGCATATGATAAGCAAGGAAAGGAGGGAGTACCACAAGATTCCATGATGGACCCTACAACTGTGTTTGGAATGCTTTTTGGAAGTGAGCTTTTTGAAGAGTATATTGGAAAACTTGCACTGGCTTCTTTAGCATCTATAGAAATTGAGGAAGACTCACAAGATCCTGAAGTTCAGAGGCAGAAAATTCAAGAAAAGATGAAAGCATGGCAGAAGGAAAGGGAACTGAAGCTTTCAACAATTCTGAAAGATCGCCTGCATCCATTTGTTATTGGTCGAGAAGATGAATTTACAGGATGGGCAAAGTCAGAAGCACGTAACCTTTCTAATGCTGCTTTTGGAGAGGCCATGCTACATACAATTGGTTATATCTACACACGAAAAGCTTCAAGAGAACTTGGAAAGGATATGAGATATATGAACGTTCCCTTTTTGGCTGAGTGGGTGCGAGACAAAGGACACCGTATTAAATCACAAGTAACAGCAGCCTCAGGAGCTGTGTCCCTAATTCAAATACAAGAAGAGCTAAAGAAGCTAAACCAAGGAGAAAACAAAGAAGAAAGCATAGTGAAAGCTATTGAAGAAAAGAAGGATGCCATGATTAATTCTCTATGGCAGATCAATGTGATTGATATTGAATCAACTCTTTCACGTGTTTGCCAAGCAGTTCTTAAAGATCCTAGTGCCTCCAAAGATGTTCTGAGGTCTCGGGCCAAAGCACTGAAAAAGTTGGGAACTATATTTCAAGGTGCTAAGGCTGCTTATAACAGAGAATACAGCCTACGTAAAGAAAGCAACAACCCAGCAGGTGCTGCTTCCTCATCATAG 1020 0.4098 MVKDTAYYDMLDVNVDASAAEIKKAYYVKARIVHPDKNHGDPKAAENFQKLGEAYQVLSDPGKREAYDKQGKEGVPQDSMMDPTTVFGMLFGSELFEEYIGKLALASLASIEIEEDSQDPEVQRQKIQEKMKAWQKERELKLSTILKDRLHPFVIGREDEFTGWAKSEARNLSNAAFGEAMLHTIGYIYTRKASRELGKDMRYMNVPFLAEWVRDKGHRIKSQVTAASGAVSLIQIQEELKKLNQGENKEESIVKAIEEKKDAMINSLWQINVIDIESTLSRVCQAVLKDPSASKDVLRSRAKALKKLGTIFQGAKAAYNREYSLRKESNNPAGAASSS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01893 339 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Cca04g01893 339 PRINTS DnaJ domain signature 8 26 IPR001623 -
Cca04g01893 339 PRINTS DnaJ domain signature 26 41 IPR001623 -
Cca04g01893 339 PRINTS DnaJ domain signature 43 63 IPR001623 -
Cca04g01893 339 PRINTS DnaJ domain signature 63 82 IPR001623 -
Cca04g01893 339 PANTHER BNAA01G05380D PROTEIN 1 328 - -
Cca04g01893 339 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 328 - -
Cca04g01893 339 Gene3D DnaJ domain 1 86 IPR036869 -
Cca04g01893 339 SMART dnaj_3 5 63 IPR001623 -
Cca04g01893 339 CDD DnaJ 7 60 IPR001623 -
Cca04g01893 339 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Cca04g01893 339 Pfam DnaJ domain 7 68 IPR001623 -
Cca04g01893 339 Pfam X-domain of DnaJ-containing 135 324 IPR026894 -
Cca04g01893 339 SUPERFAMILY Chaperone J-domain 2 99 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01893 Cca-Chr4 36294548 36301341 Transposed