Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01892 ATGGCAAGTTATTCTTTGTTTATCTCTCTAGTTTTATTTTGCCTTAACAACTTGATCTCTTTATCAAAGGCCCATAATAATGGGTTTAGTGTGGAAATCATCCACCGTGACTCAATAAGCTCACCACTATATCGTGCCACAGAAACTGAATTTGAGCGAGTTGTAAATGCGGTGCGTCGTTCCATCAATCGTGCCAATCATTTGGGACAATCTTTAGTCTCTCCAAACACAGCTGAGGCAACTGTGGAAGGATATGAAGGGGAGTTCTTGATGAGCTATTCAGTTGGAACCCCACCATTCCAACTCTATGGTATTGTTGATACGGGTAGTGACATTATTTGGCTACAATGCGAACCTTGTGAAGAATGCTACAACCAAACAACACCTATATTTGATCCTTCAAAATCCAAAACCTACAAAACCCTCCCTTGCACTTCTACTACATGTAAATCTGCGCGCAGATTTTCTTGCAGTGGCGAAAAATGTCAATATAGTATTAATTATGGGGATGGCTCTCACTCACAAGGAGATCTTAGTGTGGAAACCCTCACTTTAGGGTCCACTAGTGGATCTTCTGTCCAATTTCCTAAAACATTGTTAGGATGTGGACACAGCAATACCGGGACCTTTCATGGGAAAGCCTCTGGCATAGTTGGCCTAGGAGGAGGACCTATGTCCCTTATAACTCAATTGGGTTCTTCAATAGCTGGAAAGTTTTCTTACTGTTTAGCACCACTATTCACAGAATCTAAGTCATCTAGCAAACTCAATTTTGGAGATGCTGCTGTGGTTTCTGGGGCTGGAACTGTCTCAACCCCAATACTCCCACAAGAAGGAAAGATATTTTACTTCCTAAACTTAGAAGCATTCAGTGTTGGAAACAAAAGAATAGAGTTTGGAAGCTCTAACTCTTCTAATGAAGAAGGAAATATCATAATTGACTCAGGTACAACACTCACTCTTTTGCCAGATGATGTTTACTCAAATTTGGAATCAGCAGTAGCAGATGCAGTTAAATTAGAGCGTGTCGAGGATCCAAGTAACCTATTAAGTCTTTGCTTCCAATCTACATCTAATGAACTAGATGTGCCTATTATCACAGCACATTTTAGCGGGGCAGATGTTAAGTTGAATCCTATTAACACCTTTGTTGAAGTGGCTGACGGGATAGTATGTTTGGCTTTCCGTTCAAGTGACACTCTTGCCATCTTTGGGAACTTGGCACAACAAAACCTCTTGGTTGGCTATGACCTCAAAAAGAATATACTCTCCTTTGAACCCACAGATTGTTCCAAGAAGTGA 1302 0.4086 MASYSLFISLVLFCLNNLISLSKAHNNGFSVEIIHRDSISSPLYRATETEFERVVNAVRRSINRANHLGQSLVSPNTAEATVEGYEGEFLMSYSVGTPPFQLYGIVDTGSDIIWLQCEPCEECYNQTTPIFDPSKSKTYKTLPCTSTTCKSARRFSCSGEKCQYSINYGDGSHSQGDLSVETLTLGSTSGSSVQFPKTLLGCGHSNTGTFHGKASGIVGLGGGPMSLITQLGSSIAGKFSYCLAPLFTESKSSSKLNFGDAAVVSGAGTVSTPILPQEGKIFYFLNLEAFSVGNKRIEFGSSNSSNEEGNIIIDSGTTLTLLPDDVYSNLESAVADAVKLERVEDPSNLLSLCFQSTSNELDVPIITAHFSGADVKLNPINTFVEVADGIVCLAFRSSDTLAIFGNLAQQNLLVGYDLKKNILSFEPTDCSKK 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01892 433 ProSiteProfiles Peptidase family A1 domain profile. 89 426 IPR033121 -
Cca04g01892 433 PANTHER OS07G0603500 PROTEIN-RELATED 8 431 - -
Cca04g01892 433 Pfam Xylanase inhibitor C-terminal 283 426 IPR032799 -
Cca04g01892 433 Gene3D Acid Proteases 65 258 IPR021109 -
Cca04g01892 433 Pfam Xylanase inhibitor N-terminal 89 260 IPR032861 -
Cca04g01892 433 Gene3D Acid Proteases 259 433 IPR021109 -
Cca04g01892 433 CDD pepsin_A_like_plant 88 430 IPR034161 -
Cca04g01892 433 SUPERFAMILY Acid proteases 86 431 IPR021109 -
Cca04g01892 433 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 311 322 IPR001969 GO:0004190|GO:0006508
Cca04g01892 433 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 8 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01892 Cca-Chr4 36266420 36267876 Dispersed/Transposed