Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01886 ATGGCTTCATTGAAACTTCCAGAGGTTGTTCCTTCTCCTACCCAAGACAGTGAACGACTCAGAAACGCTTTCCAAGGATTTGGGACTGAAGAGAAAGCGATAATATTGGTATTGGGACACAGGAATGCTCAACGAAGGAAGGAAATCAAAGAAACTTATCAACAGCTTTACAATGAGTCACTCATTGATCGTCTCCATTCTGAACTGTCTGGTGATTTTAGAAATGCTGTGATTCTCTGGACTTATGATCCTGCAGAAAGGCATGCAAGACTAGCAAAGGATGCATTGAAGACTAAGAGGAAGGGGATTAAACACCTTCAGGTTTTGGTTGAAATAGCATGTGCATCAACTCCTAACCATTTGGTGGCTGTGAGGCAGGCTTACTGCTCTCTCTTTGATTGCTCACTTGAGGAGGACATCATAGCCTCTGTTGCTCCACCCCTTAGAAAGCTTTTAGTGAGCCTAGTAAGCTCATACAGGTATGATAAAGTAGCTGTAAATTTGGAGGTTGCCAAGTCAGAGGCATCAAAACTACATGAAGCTATCAACAGCAAGCAATTGGATGATGATCATATTGTTTGGATACTTAGCACCAGGAATCTTTTCCAGCTCCGGGAAACTTTTGCATGCTACAAGAACCTCTACAAGAATACATTGGAACAGGGCATAAAAAATTGTGGTAATGGTGATTTGGAATCTCTCTTACATGTGGTAATATGGTGTATAGACAGCCCCGAGAAACATTTTTCAAAGGTTGTAAGAGATTCTATTCTTGGGTTTGGAACCGATGAAGATTCACTCAACAGAGCAATTATAACTCGAGCTGAAATCGACCTGTTGAAAGTGAGATTCGAATATAGCAACATGTACAAGTCGAGTCTTGATGATGATGTTGTTGGGGACACCTCAGGGGACTACAGAGATTTTTTGATGACTTTGTTAGGGAAAGGTCCCAATGAAGAGTGA 966 0.4151 MASLKLPEVVPSPTQDSERLRNAFQGFGTEEKAIILVLGHRNAQRRKEIKETYQQLYNESLIDRLHSELSGDFRNAVILWTYDPAERHARLAKDALKTKRKGIKHLQVLVEIACASTPNHLVAVRQAYCSLFDCSLEEDIIASVAPPLRKLLVSLVSSYRYDKVAVNLEVAKSEASKLHEAINSKQLDDDHIVWILSTRNLFQLRETFACYKNLYKNTLEQGIKNCGNGDLESLLHVVIWCIDSPEKHFSKVVRDSILGFGTDEDSLNRAIITRAEIDLLKVRFEYSNMYKSSLDDDVVGDTSGDYRDFLMTLLGKGPNEE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01886 321 SUPERFAMILY Annexin 2 315 IPR037104 GO:0005509|GO:0005544
Cca04g01886 321 PRINTS Plant annexin signature 122 136 IPR009118 -
Cca04g01886 321 PRINTS Plant annexin signature 164 184 IPR009118 -
Cca04g01886 321 PRINTS Plant annexin signature 229 247 IPR009118 -
Cca04g01886 321 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509|GO:0005544
Cca04g01886 321 PRINTS Annexin family signature 65 81 IPR001464 GO:0005509|GO:0005544
Cca04g01886 321 PRINTS Annexin family signature 257 277 IPR001464 GO:0005509|GO:0005544
Cca04g01886 321 PRINTS Annexin family signature 301 314 IPR001464 GO:0005509|GO:0005544
Cca04g01886 321 Gene3D Annexin 168 243 IPR037104 GO:0005509|GO:0005544
Cca04g01886 321 Gene3D Annexin 83 156 IPR037104 GO:0005509|GO:0005544
Cca04g01886 321 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509|GO:0005544
Cca04g01886 321 SMART annex3 28 80 IPR018502 GO:0005509|GO:0005544
Cca04g01886 321 SMART annex3 107 155 IPR018502 GO:0005509|GO:0005544
Cca04g01886 321 SMART annex3 261 313 IPR018502 GO:0005509|GO:0005544
Cca04g01886 321 SMART annex3 188 238 IPR018502 GO:0005509|GO:0005544
Cca04g01886 321 PANTHER ANNEXIN D3 7 316 - -
Cca04g01886 321 PANTHER ANNEXIN 7 316 - -
Cca04g01886 321 ProSiteProfiles Annexin repeat profile. 83 157 IPR018502 GO:0005509|GO:0005544
Cca04g01886 321 Gene3D Annexin 1 82 IPR037104 GO:0005509|GO:0005544
Cca04g01886 321 ProSitePatterns Annexin repeat signature. 261 313 IPR018252 GO:0005509|GO:0005544
Cca04g01886 321 ProSiteProfiles Annexin repeat profile. 244 315 IPR018502 GO:0005509|GO:0005544
Cca04g01886 321 Pfam Annexin 15 78 IPR018502 GO:0005509|GO:0005544
Cca04g01886 321 Pfam Annexin 250 313 IPR018502 GO:0005509|GO:0005544
Cca04g01886 321 Pfam Annexin 99 155 IPR018502 GO:0005509|GO:0005544
Cca04g01886 321 Pfam Annexin 175 237 IPR018502 GO:0005509|GO:0005544
Cca04g01886 321 Gene3D Annexin 245 316 IPR037104 GO:0005509|GO:0005544
Cca04g01886 321 ProSiteProfiles Annexin repeat profile. 169 240 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01886 Cca-Chr4 36036257 36042884 Tandem