Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01885 ATGGCTTTCAATCAAGAGTTAGAAGCTATCACCCAAGCTTTCTCAGGGCATGGAGTGGATGAGAAATCATTGGTAACAATACTGGGAAAATGGGATCCTCAAGAGAGAGAATCTTTCAGGAAGAACACACCACATTCGTTCATTGAGGATCATGAACGTCATTTTCAGAGGTGTGATGATCACTATGTTCGTCTTCTCAAGCATGAATTCGTGCGTTTTAAGAATGCTGTGGTGCTTTGGACCATGCACCCTTGGGAAAGAGATGCTCGTTTAGTGAAAGAGGCCCTAAAGAAGGGCCCAAGTGCCTATGGAGTGTTGGTTGAGGTCGCATGCACACGATCCTCAGAGGAGCTTTTGGGAGCTAGGAAGGCCTATCATTCTCTCTTTGATCACTCCATTGAAGAAGATGTTGCTTCTCACATCCATGGCATCGAACGAAAGTTATTGGTTGCCCTTGTGAGTGCCTATAGATATGAAGGATCGAAGGTTAAAGATGACACTGCAAAATCAGAGGCCAAAATCCTTTCCAATGCCATTAAGAATGTTCATAAGAAGCCTATTAATGAGGATGATGAAGTAATAAGGATATTGGCAACAAGAAGCAAGCTACATCTACAAGCAGTTTACAAGCACTATAAAGAGATATCTGGCAAGAACCTTGATGAGGACCTTGATGATTTAAGATTTAAAGAGACTGTGCAATGCCTTTGTACCCCACAAATATATTTCAGTAAGGTTTTGAATGCAGCATTGAGAATTGATGTGGACAAGAATACTAAGAAATCACTTACTCGTGTTATTGTTACTCGAGCTGACATTGATATAAAGGACATAAAAGCAGAGTACCATAACCTATATGAAGTTTCTTTACCACAGAAAGTTGAAGAGGTTGCTAGAGGAAACTACAAGGATTTCTTGCTAAACTTGATTGCAAGAGGATAA 942 0.4055 MAFNQELEAITQAFSGHGVDEKSLVTILGKWDPQERESFRKNTPHSFIEDHERHFQRCDDHYVRLLKHEFVRFKNAVVLWTMHPWERDARLVKEALKKGPSAYGVLVEVACTRSSEELLGARKAYHSLFDHSIEEDVASHIHGIERKLLVALVSAYRYEGSKVKDDTAKSEAKILSNAIKNVHKKPINEDDEVIRILATRSKLHLQAVYKHYKEISGKNLDEDLDDLRFKETVQCLCTPQIYFSKVLNAALRIDVDKNTKKSLTRVIVTRADIDIKDIKAEYHNLYEVSLPQKVEEVARGNYKDFLLNLIARG 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01885 313 PRINTS Annexin family signature 15 37 IPR001464 GO:0005509|GO:0005544
Cca04g01885 313 PRINTS Annexin family signature 178 204 IPR001464 GO:0005509|GO:0005544
Cca04g01885 313 PRINTS Annexin family signature 253 273 IPR001464 GO:0005509|GO:0005544
Cca04g01885 313 PRINTS Annexin family signature 297 310 IPR001464 GO:0005509|GO:0005544
Cca04g01885 313 SMART annex3 189 236 IPR018502 GO:0005509|GO:0005544
Cca04g01885 313 SMART annex3 100 152 IPR018502 GO:0005509|GO:0005544
Cca04g01885 313 SMART annex3 254 309 IPR018502 GO:0005509|GO:0005544
Cca04g01885 313 ProSiteProfiles Annexin repeat profile. 83 154 IPR018502 GO:0005509|GO:0005544
Cca04g01885 313 Pfam Annexin 87 152 IPR018502 GO:0005509|GO:0005544
Cca04g01885 313 Pfam Annexin 172 225 IPR018502 GO:0005509|GO:0005544
Cca04g01885 313 Pfam Annexin 260 309 IPR018502 GO:0005509|GO:0005544
Cca04g01885 313 PANTHER ANNEXIN D4 3 313 - -
Cca04g01885 313 ProSiteProfiles Annexin repeat profile. 166 252 IPR018502 GO:0005509|GO:0005544
Cca04g01885 313 SUPERFAMILY Annexin 4 311 IPR037104 GO:0005509|GO:0005544
Cca04g01885 313 Gene3D Annexin 83 153 IPR037104 GO:0005509|GO:0005544
Cca04g01885 313 Gene3D Annexin 239 311 IPR037104 GO:0005509|GO:0005544
Cca04g01885 313 Gene3D Annexin 167 237 IPR037104 GO:0005509|GO:0005544
Cca04g01885 313 PANTHER ANNEXIN 3 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01885 Cca-Chr4 36023804 36027365 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01885 04 36023804 36027365 Cca04g01885 04 36023804 36027365 ECH