Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01884 ATGGCTACTCTGGTTGCTGCTCGAGATCATTCTCCACAGGAAGATGCAGAAGCTCTCTGGAAGGCTGTTAAGGGGTGGGGGACGGATGAAAAGAGCATAATAGAAATACTGGGTCATAGAAATGCTTACCAAAGGCAGCAAATTAGACAAGCATTCCAGGACATTCACCAAGAGGATCTCATCAAACGCCTTGAGTCTGAGCTAACTGGTGACTTTGAGAGAGCTGTATACCGGTGGATATTTGAACCTGCAGAACGTTATGCTGTGTTGGCCAATGTTGCCATAAAAAATGCTAACAAAGACTACCATGTGATTGTGGAAATTGCATGTGTGCTTCAACCTGAAGAGCTTTTGGGTGTGAGACGAGCCTACCACAATCGCTACAACCATTCCTTGGAAGAAGATGTGGCTGTTCACACCACTGGCCTTCTTCGTCAGCTTTTGGTTGGACTGGTAAGCTCATTTAGGTATAGGGGTGATGAGATCAATCTAAGATTGGCAAAATCTGAAGCTAACATTCTTCAAGAAGCTATCAAAGACAAGAAAGGTAATCGTGAAGAAATTATCAGGATCCTCAGCACAAGGAGCAAGACCCAACTTGTGGCAACTTTCAATAGCTACAAAGATGAAAGAGGAATTTCTATTAGCAAGAAACTGTTGGAGGAAACATCTGATGACTTTGATAAGGCTGTGCATGTTGCCATTCATTGCATCAATGATCACAAGAAGTATTATGAAAAGGTTTTGCGTAGTGCGATAAAAGGAGTTGGAACGAAAGAGGATGAACTAACTCGGGTGTTTGTCACAAGGGCTGAGAAGGATCTAAAGGACATCAAAGAGTTATATTATAAGAAAAATAGTGTGCACCTTGAGGATGCAGTCGCCAAGGAAGTCTCGAGACACTACAAGAAATTTCTCCTCACTTTGTTGGGAAAATAA 939 0.4239 MATLVAARDHSPQEDAEALWKAVKGWGTDEKSIIEILGHRNAYQRQQIRQAFQDIHQEDLIKRLESELTGDFERAVYRWIFEPAERYAVLANVAIKNANKDYHVIVEIACVLQPEELLGVRRAYHNRYNHSLEEDVAVHTTGLLRQLLVGLVSSFRYRGDEINLRLAKSEANILQEAIKDKKGNREEIIRILSTRSKTQLVATFNSYKDERGISISKKLLEETSDDFDKAVHVAIHCINDHKKYYEKVLRSAIKGVGTKEDELTRVFVTRAEKDLKDIKELYYKKNSVHLEDAVAKEVSRHYKKFLLTLLGK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01884 312 ProSiteProfiles Annexin repeat profile. 240 311 IPR018502 GO:0005509|GO:0005544
Cca04g01884 312 SUPERFAMILY Annexin 3 311 IPR037104 GO:0005509|GO:0005544
Cca04g01884 312 Gene3D Annexin 82 153 IPR037104 GO:0005509|GO:0005544
Cca04g01884 312 PANTHER ANNEXIN 7 312 - -
Cca04g01884 312 ProSitePatterns Annexin repeat signature. 257 309 IPR018252 GO:0005509|GO:0005544
Cca04g01884 312 ProSiteProfiles Annexin repeat profile. 165 236 IPR018502 GO:0005509|GO:0005544
Cca04g01884 312 Gene3D Annexin 164 239 IPR037104 GO:0005509|GO:0005544
Cca04g01884 312 SMART annex3 257 309 IPR018502 GO:0005509|GO:0005544
Cca04g01884 312 SMART annex3 27 79 IPR018502 GO:0005509|GO:0005544
Cca04g01884 312 SMART annex3 182 235 IPR018502 GO:0005509|GO:0005544
Cca04g01884 312 SMART annex3 99 151 IPR018502 GO:0005509|GO:0005544
Cca04g01884 312 ProSiteProfiles Annexin repeat profile. 10 81 IPR018502 GO:0005509|GO:0005544
Cca04g01884 312 Pfam Annexin 170 232 IPR018502 GO:0005509|GO:0005544
Cca04g01884 312 Pfam Annexin 247 309 IPR018502 GO:0005509|GO:0005544
Cca04g01884 312 Pfam Annexin 92 151 IPR018502 GO:0005509|GO:0005544
Cca04g01884 312 Pfam Annexin 15 76 IPR018502 GO:0005509|GO:0005544
Cca04g01884 312 Gene3D Annexin 1 81 IPR037104 GO:0005509|GO:0005544
Cca04g01884 312 ProSiteProfiles Annexin repeat profile. 82 153 IPR018502 GO:0005509|GO:0005544
Cca04g01884 312 Coils Coil 164 184 - -
Cca04g01884 312 PANTHER ANNEXIN 7 312 - -
Cca04g01884 312 PRINTS Plant annexin signature 118 132 IPR009118 -
Cca04g01884 312 PRINTS Plant annexin signature 160 180 IPR009118 -
Cca04g01884 312 PRINTS Plant annexin signature 225 243 IPR009118 -
Cca04g01884 312 Gene3D Annexin 242 312 IPR037104 GO:0005509|GO:0005544
Cca04g01884 312 PRINTS Annexin family signature 24 46 IPR001464 GO:0005509|GO:0005544
Cca04g01884 312 PRINTS Annexin family signature 64 80 IPR001464 GO:0005509|GO:0005544
Cca04g01884 312 PRINTS Annexin family signature 91 112 IPR001464 GO:0005509|GO:0005544
Cca04g01884 312 PRINTS Annexin family signature 173 199 IPR001464 GO:0005509|GO:0005544
Cca04g01884 312 PRINTS Annexin family signature 253 273 IPR001464 GO:0005509|GO:0005544
Cca04g01884 312 PRINTS Annexin family signature 297 310 IPR001464 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01884 Cca-Chr4 35986711 35990254 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01884 04 35986711 35990254 Cca04g01884 04 35986711 35990254 ECH
Cca10g01759 10 32428783 32433691 Cca04g01884 04 35986711 35990254 PCT