Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01883 ATGGCCACCCTTATTGCTCCCACCAGCTTTTCACCTGGTGCAGATGCAGAAGCTCTTCGAAAAGCTTTCCAAGGATGGGGGACTGATGAGAAAACCGTTATTGCAATATTGGGTCACAGAAATGTTTATCAGAGGCAACAAATCAGAAAGTCTTATGAGGAAATTTACCAAGAAGACCTCATCAAACGCCTAGAGTCTGAGCTCTCTGGAGACTTTGAGAGAGCTGTGTACCGTTGGATGCTGGAACATGCAGATCGTGATGCTGTTTTGGCCAACGTGGCCATCAAGAGTGGCAGCAAAGGTTACCATGTGATTGTGGAAATTGCTTGTGTGCTTTCCCCTGAAGAGGTTTTGGCTGTGAGGCGTGCCTATCACAACCGTTACAAGAGATCTTTGGAAGAAGATATAGCCACTAATACCACTGGCCATCTTCGCCAGCTGTTGGTTGGGTTGGTGACCTCATTTAGGTATGGTGGTGATGAGATCAATGCTAAATTGGCAAAAAGTGAAGCTGATATTCTTCATGAATCTGTCAAGGAGAAAAAGGGTAATCATGAAGAAGCCATTAGGATCCTTACTACAAGGAGCAAGACCCAACTTATGGCAACTTTCAACTGCTACAGAGATGACCATGGCACTTCCATAACCAAGAAACTGTTGGATAATGCATCTGATGATTTCCACAAGGCATTGCACACTGCCATTAGATGTCTCAATGACCACAATAAGTACTATGAAAAGGTTTTGCGCAATGCCATCAAAAGGGTTGGAACTGATGAGGATGCAATCACCCGTGTGGTGGTCTCAAGGGCTGAGAAAGACATGAAGCACATCAAAGAGGTGTATTATAAGAGAAACAGTGTTCACCTTGAGGATGCATTGGCCAAGGAAATCTCAGGGGATTACAAGAAATTCATCCTCACTTTGTTGGGCAAGAAAGATTGA 945 0.4423 MATLIAPTSFSPGADAEALRKAFQGWGTDEKTVIAILGHRNVYQRQQIRKSYEEIYQEDLIKRLESELSGDFERAVYRWMLEHADRDAVLANVAIKSGSKGYHVIVEIACVLSPEEVLAVRRAYHNRYKRSLEEDIATNTTGHLRQLLVGLVTSFRYGGDEINAKLAKSEADILHESVKEKKGNHEEAIRILTTRSKTQLMATFNCYRDDHGTSITKKLLDNASDDFHKALHTAIRCLNDHNKYYEKVLRNAIKRVGTDEDAITRVVVSRAEKDMKHIKEVYYKRNSVHLEDALAKEISGDYKKFILTLLGKKD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01883 314 PRINTS Plant annexin signature 118 132 IPR009118 -
Cca04g01883 314 PRINTS Plant annexin signature 160 180 IPR009118 -
Cca04g01883 314 PRINTS Plant annexin signature 225 243 IPR009118 -
Cca04g01883 314 PANTHER ANNEXIN 8 314 - -
Cca04g01883 314 ProSiteProfiles Annexin repeat profile. 82 153 IPR018502 GO:0005509|GO:0005544
Cca04g01883 314 ProSiteProfiles Annexin repeat profile. 10 81 IPR018502 GO:0005509|GO:0005544
Cca04g01883 314 ProSitePatterns Annexin repeat signature. 257 309 IPR018252 GO:0005509|GO:0005544
Cca04g01883 314 Gene3D Annexin 82 153 IPR037104 GO:0005509|GO:0005544
Cca04g01883 314 PANTHER ANNEXIN 8 314 - -
Cca04g01883 314 Gene3D Annexin 165 239 IPR037104 GO:0005509|GO:0005544
Cca04g01883 314 SMART annex3 99 151 IPR018502 GO:0005509|GO:0005544
Cca04g01883 314 SMART annex3 27 79 IPR018502 GO:0005509|GO:0005544
Cca04g01883 314 SMART annex3 257 309 IPR018502 GO:0005509|GO:0005544
Cca04g01883 314 SMART annex3 182 234 IPR018502 GO:0005509|GO:0005544
Cca04g01883 314 PRINTS Annexin family signature 24 46 IPR001464 GO:0005509|GO:0005544
Cca04g01883 314 PRINTS Annexin family signature 64 80 IPR001464 GO:0005509|GO:0005544
Cca04g01883 314 PRINTS Annexin family signature 173 199 IPR001464 GO:0005509|GO:0005544
Cca04g01883 314 PRINTS Annexin family signature 253 273 IPR001464 GO:0005509|GO:0005544
Cca04g01883 314 PRINTS Annexin family signature 297 310 IPR001464 GO:0005509|GO:0005544
Cca04g01883 314 Gene3D Annexin 242 312 IPR037104 GO:0005509|GO:0005544
Cca04g01883 314 Pfam Annexin 170 232 IPR018502 GO:0005509|GO:0005544
Cca04g01883 314 Pfam Annexin 247 309 IPR018502 GO:0005509|GO:0005544
Cca04g01883 314 Pfam Annexin 94 151 IPR018502 GO:0005509|GO:0005544
Cca04g01883 314 Pfam Annexin 15 76 IPR018502 GO:0005509|GO:0005544
Cca04g01883 314 SUPERFAMILY Annexin 3 312 IPR037104 GO:0005509|GO:0005544
Cca04g01883 314 Gene3D Annexin 2 81 IPR037104 GO:0005509|GO:0005544
Cca04g01883 314 ProSiteProfiles Annexin repeat profile. 165 236 IPR018502 GO:0005509|GO:0005544
Cca04g01883 314 ProSiteProfiles Annexin repeat profile. 240 311 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01883 Cca-Chr4 35931916 35935110 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01883 04 35931916 35935110 Cca04g01883 04 35931916 35935110 ECH
Cca10g01758 10 32394302 32400968 Cca04g01883 04 35931916 35935110 PCT