Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01878 ATGTCACGCTCTTCATATCTTGTTGTTTTATTATGTCTTTACAACCTTACTTTCTTAGAGGCTCTTAATGATGGATTTAGTTTGGAGATCATCCACCGTGACTCGTCAAGATCACCATTCTACCGTCCAACAGAAACTCAATTCCAACGAGTTGCCAATGCTGTGCGCCGCTCCATCAAACGGACCAATACACCCAATGCCATTATCACACCAGATTTTGGTGAATACCTTGTGAGCTATTCAATTGGAACCCCACCATTCCAACTCTTTGGTATTGTTGACACGGGTAGTGACATTATTTGGCTACAATGCCAACCATGTAAAGCTTGCTACAAACAAACCGTTCCATTATTCAATCCTTCCAAGTCCAAAACATTCGAAACCCTCCCATGTTCCAAAACATGTCTTTCTGTGCAAGGTGCGTCTTGCTCCAATAAGAAAACTTGTGAATATAATATTGGTTATGCGAGTGGCGCATACTCCCATGGAGATCTTAGTGTGGAAACCCTCACATTAGGCTCCACTAGTGGCTCTTCTATCCAATTTCCTAAAACTGTGATAGGATGTGGACATAACAATTCAGTTTCCTTTCAAGAGAAGAACTCTGGCATAGTTGGCCTAGGTAATGGACCTGTGTCCCTTATATCTCAATTGAGCTCTTCAATACGTGGAAAATTTTCTCATTGTTTAGTACCAATGCTTTCACAATCTAACTCATCAAGCAAACTCAATTTTGGAGATGCTGCTGAGGTTTCTGGGGTTGGGACTGTCTCAACCCCATTAGTTCTACGTCAAGGACAAGTATTTTACTTCCTAACCATAGAAGCATTGAGTGTTGAAAGCAAAAGAATAGAGTTTAAAAGCCCTTCATCTAGACCTAGTGTTGAGGGAAACATCGTAATTGACTCAGGTACAACCCTCACTTTTTTGCCACCTGATGTTTACTCAAAGTTTGAATCAGCAGTAGTACAAGTGGTTAAATTAAAGCGCGTTCAGGATCCAACTAAATTATTTAGCCTTTGCTATAAAGCTACATTGGATAAGCTAAATGCACCAAAGATCACTGCAAATTTCAAGGGTGCAGATGTTGGGTTAAATTCTATCAACACCTTTACTCAAGTGGCCGATGAGGTAGTATGTTTGGCTTTCCAGCCAACTCAATCAGGTGCTGTCTTTGGGAACTTGGCTCAACAAAGCTTCTTGATTGGCTACGACCTCCAAAAGAAAACAGTCTCCTTTAAGCGCACAGATTGCACAAAGTAG 1263 0.4101 MSRSSYLVVLLCLYNLTFLEALNDGFSLEIIHRDSSRSPFYRPTETQFQRVANAVRRSIKRTNTPNAIITPDFGEYLVSYSIGTPPFQLFGIVDTGSDIIWLQCQPCKACYKQTVPLFNPSKSKTFETLPCSKTCLSVQGASCSNKKTCEYNIGYASGAYSHGDLSVETLTLGSTSGSSIQFPKTVIGCGHNNSVSFQEKNSGIVGLGNGPVSLISQLSSSIRGKFSHCLVPMLSQSNSSSKLNFGDAAEVSGVGTVSTPLVLRQGQVFYFLTIEALSVESKRIEFKSPSSRPSVEGNIVIDSGTTLTFLPPDVYSKFESAVVQVVKLKRVQDPTKLFSLCYKATLDKLNAPKITANFKGADVGLNSINTFTQVADEVVCLAFQPTQSGAVFGNLAQQSFLIGYDLQKKTVSFKRTDCTK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01878 420 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 91 102 IPR001969 GO:0004190|GO:0006508
Cca04g01878 420 CDD pepsin_A_like_plant 75 418 IPR034161 -
Cca04g01878 420 ProSiteProfiles Peptidase family A1 domain profile. 76 414 IPR033121 -
Cca04g01878 420 SUPERFAMILY Acid proteases 73 418 IPR021109 -
Cca04g01878 420 Pfam Xylanase inhibitor C-terminal 270 414 IPR032799 -
Cca04g01878 420 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 7 419 - -
Cca04g01878 420 Pfam Xylanase inhibitor N-terminal 76 247 IPR032861 -
Cca04g01878 420 Gene3D Acid Proteases 246 420 IPR021109 -
Cca04g01878 420 PANTHER OS07G0603500 PROTEIN-RELATED 7 419 - -
Cca04g01878 420 Gene3D Acid Proteases 56 245 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01878 Cca-Chr4 35800963 35802241 Tandem