Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01877 ATGTCACGCTCTTCATGTCTTGCTCTTGTTTTGTTGTGTCTTTACAACCTCTCTTTCTTAGAAGCTTTCAACAATGGCTTTAGTGCGGAGATGATCCATCGTGACTCGTCAAAATCACCATTCTATCAACCCACAGAAACTCAAATTCAGCGAGTTGCTAATGCTGTGCGTCGTTCCATTGACCGTGCCAATCATTTCAACCAACATTTTGTCAATCCAAACAAAGTTCAATCCCCTATAACATTACTATATGATGGTGACTACCTCTTGAGCTATTTAGCTGGAACCCCACCATTCCCAGTTTATGGTATTCTTGATACAGGTAGTGACATGGTTTCATTGCAATGTCAACTTTGTGCAACATGTTACAATGACACTGGTCCAATGTTTGATCCTTCATATTCTAAAACATACAAAAACCTTCCTTGCTCTTCTACCACATGTCAATTAGTGAAAGGTACTACCTGCTCCTCTGATAAAAGGAAAAATTGTGAATATACTCAAAACTATAAGGATGGATCACATTCACAAGGAGATCTTAGTGTGGAGACCCTTACTTTGGGTTCCACCAATGGCTCTTTTGTCACATTTCCTAGAACTGTGATAGGATGCATACGCAACACTAATTTGTCCTTTGATACCACTGGCATAGTTGGCCTGGGAAGTGGACCCATGTCTCTCATATCCCAATTGAGTTCTTCAATTGGTGGAAAGTTTTCATATTGTTTGGCACCAACATCTATCATGTCTAGCAAACTCAATTTGGGAGATGTTGCTGTGGTTTCTGGGGATGGAGTTGTCTCAACCCCAATAGTACTTCGACATGGACAAACATTTTACTACCTAACTTTGGAAGCATTCAGTGTGGGAAACAAAAGGATAGAGTTTGGAAGCTCCTCATTTGGATCAAGTGGAAAGGGAAACATCATAATTGACTCAGCTACAACATTCACTCTTTTGCCACATGATGTCTACTCAAAGTTGGAATCAGCAGTAGTAGATGTTGTTAAGTTAGAGCGTGTTGTGGATCCACTTAAACAGTTCAAACTTTGTTATAAAAGTACATTTGTTAAACTAGATATACCAGTGATTGTGGCACATTTTAATGGTGCGGACATCAAGTTAAATGCTATCAACACCTTTATTGTAGCAGGCGATGGAGTAGTTTGTTTGGCTTTCTTGCCAAGTCAAACTGGTGCTATTTTTGGGAACTTGGCTCAACAAAACTTCTTAGTTGGCTATGACCTCCAAAAGAAAATAATCTCCTTTAAGCCCACCGATTGCACTAAGCAGTGA 1296 0.3974 MSRSSCLALVLLCLYNLSFLEAFNNGFSAEMIHRDSSKSPFYQPTETQIQRVANAVRRSIDRANHFNQHFVNPNKVQSPITLLYDGDYLLSYLAGTPPFPVYGILDTGSDMVSLQCQLCATCYNDTGPMFDPSYSKTYKNLPCSSTTCQLVKGTTCSSDKRKNCEYTQNYKDGSHSQGDLSVETLTLGSTNGSFVTFPRTVIGCIRNTNLSFDTTGIVGLGSGPMSLISQLSSSIGGKFSYCLAPTSIMSSKLNLGDVAVVSGDGVVSTPIVLRHGQTFYYLTLEAFSVGNKRIEFGSSSFGSSGKGNIIIDSATTFTLLPHDVYSKLESAVVDVVKLERVVDPLKQFKLCYKSTFVKLDIPVIVAHFNGADIKLNAINTFIVAGDGVVCLAFLPSQTGAIFGNLAQQNFLVGYDLQKKIISFKPTDCTKQ 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01877 431 Gene3D Acid Proteases 256 431 IPR021109 -
Cca04g01877 431 Pfam Xylanase inhibitor N-terminal 88 257 IPR032861 -
Cca04g01877 431 Gene3D Acid Proteases 65 255 IPR021109 -
Cca04g01877 431 CDD pepsin_A_like_plant 88 428 IPR034161 -
Cca04g01877 431 Pfam Xylanase inhibitor C-terminal 280 424 IPR032799 -
Cca04g01877 431 SUPERFAMILY Acid proteases 82 428 IPR021109 -
Cca04g01877 431 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 9 429 - -
Cca04g01877 431 PANTHER OS07G0603500 PROTEIN-RELATED 9 429 - -
Cca04g01877 431 ProSiteProfiles Peptidase family A1 domain profile. 88 424 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01877 Cca-Chr4 35788545 35789840 Tandem