Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01876 ATGAGAACAATGTCGCGTTCTCCATCTCTCACAATTGTTTTGTTGTGCCTTTACAACCTCTCTTTCTTAGAGGCTCTCAACAGTGGCTTTAGTGTGGAGATGATCCATCGTGACTCATCAAAATCACCATTCTATCGTCACACAGAAACTCAATTCCAACGAGTGGCCAATGTTGTAAGTCGTTCCATTAACCGTGCAAATCACTTACACAAACGTTCTAGATCTCCAAATACAATTGAGGCCACAGTAACACCAGATCAAGAAGGTGACTACCTTATGAGCTATTCAGTTGGAACCCCACCATTCCAACTCTTCGGTATTATTGATACAGGTAGTGACTTAGTTTGGTTGCAATGTCAACCTTGTAAAAGTTGTTACAACCAAACCACTCCTATATTCAATCCTTCAAAATCCAAAACCTACAAAACCCTTCCTTGCAATTCTACTACATGTAAATCGGCGGGAGCCTCTTGCTCCAATGATTCTAGAAAAACTTGTGAATATAGTATTATCTATGGGGATAAGTCACTCTCACAAGGAGATCTTAGTGTGGAGACCCTTTCTTTAGGCTCCACTAATGGTCATCTTATCCAATTTCCTAGAACTGTGATAGGATGTGGATATGACAATACTGTTTCTTTTGAAGGGAAAACATCTGGCATAGTTGGCCTTGGATTAGGACCTGTGTCCCTTGTATCTCAATTGAAATCTTCCATACGTGGAAAGTTTTCCTATTGTTTGACACCAATGTATTCACAATCTAACTCATCTAGCAAACTGCATTTTGGAGATGCTGCTGTGGTTTCTGGGAAAGGGACTATTTCAACCCCCATGGTCTTTCAAGAAGTATTTTACTTCTTAACCTTGGAAGCATTTAGTGTAGGAAACAAAAGAATAGTGTTAAGAGGCTCCTCATCTAGACCTAGTAGAAAAGGAAATATCATAATTGACTCAGGTACAACACTCACTCTTTTGCCAAAGGATGTTTATTCAAAGTTGGAATCAGCTGTCGCAGATGCAGTTAAATTAGAGCGTGCTAAGGATCCAAGTCATGAGTTGAGCCTTTGCTATAAAGTTACATCCGATGAACTAGATGTACCAGTGATCACAGCACATTTTAATGGCGCTGATGTCAAGTTGAATGCTATCAACACCTTTCTTCAAGTGGCAGATGGAGTAGTATGCTTTGCTTTCATGTCAAGTCCCATTGGTCCCATTTTTGGAAACTTGGCTCAGCAAAACTTCTTGGTTGGTTATGACCTCGAAAAGAAAATGGTCTCCTTTAAGCCCATGGATTGCACTAAGCAGTGA 1311 0.402 MRTMSRSPSLTIVLLCLYNLSFLEALNSGFSVEMIHRDSSKSPFYRHTETQFQRVANVVSRSINRANHLHKRSRSPNTIEATVTPDQEGDYLMSYSVGTPPFQLFGIIDTGSDLVWLQCQPCKSCYNQTTPIFNPSKSKTYKTLPCNSTTCKSAGASCSNDSRKTCEYSIIYGDKSLSQGDLSVETLSLGSTNGHLIQFPRTVIGCGYDNTVSFEGKTSGIVGLGLGPVSLVSQLKSSIRGKFSYCLTPMYSQSNSSSKLHFGDAAVVSGKGTISTPMVFQEVFYFLTLEAFSVGNKRIVLRGSSSRPSRKGNIIIDSGTTLTLLPKDVYSKLESAVADAVKLERAKDPSHELSLCYKVTSDELDVPVITAHFNGADVKLNAINTFLQVADGVVCFAFMSSPIGPIFGNLAQQNFLVGYDLEKKMVSFKPMDCTKQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01876 436 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 314 325 IPR001969 GO:0004190|GO:0006508
Cca04g01876 436 SUPERFAMILY Acid proteases 87 433 IPR021109 -
Cca04g01876 436 CDD pepsin_A_like_plant 91 433 IPR034161 -
Cca04g01876 436 Gene3D Acid Proteases 263 436 IPR021109 -
Cca04g01876 436 PANTHER OS07G0603500 PROTEIN-RELATED 10 434 - -
Cca04g01876 436 Pfam Xylanase inhibitor C-terminal 285 429 IPR032799 -
Cca04g01876 436 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 10 434 - -
Cca04g01876 436 Gene3D Acid Proteases 67 262 IPR021109 -
Cca04g01876 436 Pfam Xylanase inhibitor N-terminal 91 264 IPR032861 -
Cca04g01876 436 ProSiteProfiles Peptidase family A1 domain profile. 91 429 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01876 Cca-Chr4 35764631 35766076 Dispersed/Tandem