Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01875 ATGGTGTCACGTTCTTCATCTCTTGCTCTTGTTTTCTTGTGTTTTTGCAACTTCTCTTTCTTGGAGGCTCTCAAAGGTGGCTTCAGCGTGGAAATGATCCACCGTGACTCATCAAGATCACCACTCTATCGTCCCACGGAAACTCAATTCCAACGAGTTACCAATGCGGTGCGTCGTTCCATCAACCGTGCCAATCGTTTCAACGTTGACACACCCAAGGCCACGGTAACACCTGACCAAGGTGAATACCTGGTAAGCTATTCGGTCGGAACCCCACCGTTCAAGGTTTATGGCATTGTGGACACGGGTAGTGACATTGTTTGGTTGCAATGCAAGCCTTGTGACCCATGTTACAACCAAACCACTCCTATGTTTGATCCTTCAAAATCCACAACCTACAAAACCCTCCCTTGCTCTTCTGACACGTGTGAGTCAGCACGAAGCACCTCTTGCAAGGGCAGAACTTGTGAATATAGTATTAACTATGGGGATGGGTCACACTCACATGGGGATCTTAGTGTGGATACCCTCACTCTAGCCTCCACCAATGGATCTCGTGTTACATTTCCCAAAACTGTGATTGGATGTGGACATAGTAATACTGTGTCCTTTCAAGGGAGAAGCTCTGGCATAGTTGGCCTTGGAGGAGGACCTGTGTCACTTATAACTCAATTGAGTTCTTCAATTGATGGAAAGTTTTCTTATTGTTTGGCACCAATGTTTACCAACTCTAACTCATCTAGCCAACTCAACTTTGGAGATAATGCTGTGGTTTCTGGGGATGGAACTGTCTCAACCCCAATTATAGGACACGACCAAGAAATATTTTACTACCTCACATTGGAATCATTCAGTGTGGGAAAAAAGAGAGTTGAGTTTGGAAGCCCTATTTCTGATGAGTCTAGTGAAGAGGGTAATATCATAATCGACTCAGGTACAACACTCACTCTTTTGCCAAGTGATGTTTACTCAAATTTGGAATCAGCAGTAGCAGATGAGATTGCATTAGAGCGTGTTAAAGATCCAAGCAATCTACTAAGCCTGTGCTACAAAACTACTTCATCTGGTGAAGTAGATGTGCCAACAATCACTGCACATTTCAGTGGTGCCGATGTGAAGCTGAATGCTATCAACACCTTTGTTGAAGTGGCCGATGGGATAATATGTTTTGCTTTCCATCCAAGTGACGATATTGGAGCCATTTTTGGAAACTTGGCTCAGCAAAACCTCTTAGTTGGATATGATCTTCAAGAGAGCACACTCTCCTTTAAACCCACAGATTGTACCACGACGTGA 1296 0.4414 MVSRSSSLALVFLCFCNFSFLEALKGGFSVEMIHRDSSRSPLYRPTETQFQRVTNAVRRSINRANRFNVDTPKATVTPDQGEYLVSYSVGTPPFKVYGIVDTGSDIVWLQCKPCDPCYNQTTPMFDPSKSTTYKTLPCSSDTCESARSTSCKGRTCEYSINYGDGSHSHGDLSVDTLTLASTNGSRVTFPKTVIGCGHSNTVSFQGRSSGIVGLGGGPVSLITQLSSSIDGKFSYCLAPMFTNSNSSSQLNFGDNAVVSGDGTVSTPIIGHDQEIFYYLTLESFSVGKKRVEFGSPISDESSEEGNIIIDSGTTLTLLPSDVYSNLESAVADEIALERVKDPSNLLSLCYKTTSSGEVDVPTITAHFSGADVKLNAINTFVEVADGIICFAFHPSDDIGAIFGNLAQQNLLVGYDLQESTLSFKPTDCTTT 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01875 431 Gene3D Acid Proteases 60 252 IPR021109 -
Cca04g01875 431 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 307 318 IPR001969 GO:0004190|GO:0006508
Cca04g01875 431 PANTHER OS07G0603500 PROTEIN-RELATED 8 429 - -
Cca04g01875 431 CDD pepsin_A_like_plant 82 428 IPR034161 -
Cca04g01875 431 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 8 429 - -
Cca04g01875 431 Gene3D Acid Proteases 253 431 IPR021109 -
Cca04g01875 431 SUPERFAMILY Acid proteases 78 428 IPR021109 -
Cca04g01875 431 ProSiteProfiles Peptidase family A1 domain profile. 83 424 IPR033121 -
Cca04g01875 431 Pfam Xylanase inhibitor N-terminal 83 254 IPR032861 -
Cca04g01875 431 Pfam Xylanase inhibitor C-terminal 277 424 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01875 Cca-Chr4 35710740 35712035 Tandem