Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g01874 | ATGGCATCAAGTTATAATATATTCTTTGATGATAAACGGAGCAAAGCCGAGGTTGACCCTCCTCAAAATGAGGAGTCAGCAGATGTTGGTGAATTAGTAAATGATCCTGCTCTTAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCTATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGGCATGAGCTTGGCAATATCAGATGCCTGGCACTGGAGAAAGTGGCTGCATCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCAGCGGTATATATCCATATTACAGCAAGATAAAACATGAATCGCAATGTGCATATAGACCATACAACTGTCCATATGCTGGTTCAGAATGCTCTATTATGGGTGATATACCCTACCTGGTGGCACATCTGAAAGATGACCACAAAGTGGACATGCACAATGGTAGCACTTTTAACCACCGCTATGTTAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTACGGTTTATGGGTGATGATAATGAGGCGAAGAACTACAGCTACAGTTTAGAGGTAGGTGGAAATGGGAAGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATCAGAGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGGATATGGCCCTCTTGTTTTCCGGGGATGACAATAAGGAGTTGAAGCTTAGGGTTACTGGTAGGATTTGGAAAGAACAGTGA | 909 | 0.4367 | MASSYNIFFDDKRSKAEVDPPQNEESADVGELVNDPALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCSGIYPYYSKIKHESQCAYRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGKKMIWQGVPRSIRDSHRKVRDSFDGLIIQRDMALLFSGDDNKELKLRVTGRIWKEQ | 302 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g01874 | 302 | CDD | RING-HC_SIAHs | 52 | 90 | - | - | |
| Cca04g01874 | 302 | ProSiteProfiles | Zinc finger RING-type profile. | 54 | 90 | IPR001841 | - | |
| Cca04g01874 | 302 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE DIS1 | 9 | 302 | - | - | |
| Cca04g01874 | 302 | ProSiteProfiles | Zinc finger SIAH-type profile. | 107 | 167 | IPR013010 | GO:0008270 | |
| Cca04g01874 | 302 | MobiDBLite | consensus disorder prediction | 13 | 35 | - | - | |
| Cca04g01874 | 302 | CDD | Sina | 168 | 296 | - | - | |
| Cca04g01874 | 302 | SUPERFAMILY | TRAF domain-like | 107 | 298 | - | - | |
| Cca04g01874 | 302 | Pfam | Seven in absentia protein family | 96 | 295 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Cca04g01874 | 302 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 107 | 162 | IPR013083 | - | |
| Cca04g01874 | 302 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 9 | 302 | - | - | |
| Cca04g01874 | 302 | SUPERFAMILY | RING/U-box | 46 | 94 | - | - | |
| Cca04g01874 | 302 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 106 | IPR013083 | - | |
| Cca04g01874 | 302 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 163 | 295 | IPR008974 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca04g01874 | Cca-Chr4 | 35676620 | 35682106 | Transposed |