Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01873 ATGGAGTCTCTAGTTCTTCAACTCCATGAAATCTCAGCTGTCAAATTTGGCAATTTCAAACTCAAATCTGGCATCTCCTCGCCAATCTATATTGACCTCCGGCTCATTATATCTTACCCTTCCGTCCTCCGGAATATTTCTCAAACCCTTATTTCCTCTGTCTCTTCCACTTCATTTGACCATGTCTGTGGTGTCCCTTACACTGCTCTTCCCATTGCCACTTGTGTTTCTGTCACTCAGAATATTCCTATGGTCATGCGTCGCAAGGAAATCAAAGGTTATGGAACTTCTAAAGCCATTGAAGGTGATTTCAAGCACGGCCAAAGTTGCTTGATAATTGAGGATTTAGTCACTAGTGGCACATCAGTTTTGGAAACTGCTGCACCACTGCGTGCTGCAGGGTTGAAGGTCAGTGATGCTGTTGTTCTGATCGATAGAGAGCAAGGTGGGAGGGAGAATTTGGAGGGTAATGGAATCAAGCTGCATGCAATTCTTAAATTGACTGAAATGGTGAAAATTTTGAGTGAAAAAGGAAAGCTTGATAAGCAGCTGCTAGGGGTTGTTATGAGATTCTTAGAAGACAATCAGAAGGTCGCTGCTTTGGCAACTACAGCTAAGGTCCGGGCCTTACCATTTTTGGAGAGGGCTAAGTTGTCCAAGAATCCAACAGGAAGGAGGTTGTTTGAGATAATGGCTGAGAAGGAGAGTAATCTGTGTTTGGCTGCAGACGTTGGAACTGCAGCTGAATTGTTTGAAATTGCTGACAAGGTTGGGCCAGAGATATGCTTGCTGAAAACTCATGTGGATATATTTCCAGATTTTACTCCTGATTTCGGTTCTAAGCTTCGCTCGATTGCCGAAAAACACAACTTCTTAATCTTTGAGGATCGTAAGTTTGCTGACATTGGTAACACAGTGACCATGCAGTATGCAGGAGGGATCTTTCACATATTGGAATGGGCTGATATAGTAAATGCTCACATTATATCTGGTCCTGGAATTGTGGAAGGACTGAAGTTGAAGGGTTTGCCTCATGGAAAGGGTCTGTTTCTGCTTGCTGAAATGAGTTCAACTGGTAACTTTGCCAAGGGAGATTACACCGCCGCTGCAATGAAAATTGCCGAGGATCATTCTGACTTTGTTATTGGCTTCATCTCAGTCAATCCAGCATCATGGCCTGGGGCACCCGTAAATCCCTCTTTCATTCATGCAACTCCTGGAGTTCAAATGGTGACTGGTGGGGATGCTTTAGGGCAGCAATATAACACACCATATTCAGTTGTCAATGATAGGGGTAGTGATATTATCATAGTGGGTCGTGGCATCATAAAGGCAGCAAATCCCGCCCAGGCAGCTCGTGAATACCGTCTTCAAGGATGGAGTGCGTATTTAGCTAAATGCAGCTGA 1407 0.4414 MESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLIISYPSVLRNISQTLISSVSSTSFDHVCGVPYTALPIATCVSVTQNIPMVMRRKEIKGYGTSKAIEGDFKHGQSCLIIEDLVTSGTSVLETAAPLRAAGLKVSDAVVLIDREQGGRENLEGNGIKLHAILKLTEMVKILSEKGKLDKQLLGVVMRFLEDNQKVAALATTAKVRALPFLERAKLSKNPTGRRLFEIMAEKESNLCLAADVGTAAELFEIADKVGPEICLLKTHVDIFPDFTPDFGSKLRSIAEKHNFLIFEDRKFADIGNTVTMQYAGGIFHILEWADIVNAHIISGPGIVEGLKLKGLPHGKGLFLLAEMSSTGNFAKGDYTAAAMKIAEDHSDFVIGFISVNPASWPGAPVNPSFIHATPGVQMVTGGDALGQQYNTPYSVVNDRGSDIIIVGRGIIKAANPAQAAREYRLQGWSAYLAKCS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01873 468 SUPERFAMILY Ribulose-phoshate binding barrel 210 464 IPR011060 -
Cca04g01873 468 TIGRFAM pyrE: orotate phosphoribosyltransferase 8 169 IPR004467 GO:0004588
Cca04g01873 468 Pfam Phosphoribosyl transferase domain 51 152 IPR000836 -
Cca04g01873 468 SUPERFAMILY PRTase-like 3 191 IPR029057 -
Cca04g01873 468 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 224 IPR023031 GO:0004588|GO:0006221
Cca04g01873 468 Gene3D - 1 207 IPR029057 -
Cca04g01873 468 PANTHER PHOSPHORIBOSYLTRANSFERASE, OROTIDINE 5-PHOSPHATE DECARBOXYLASE 1 468 - -
Cca04g01873 468 CDD PRTases_typeI 59 166 IPR000836 -
Cca04g01873 468 CDD OMP_decarboxylase_like 238 455 - -
Cca04g01873 468 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 1 468 - -
Cca04g01873 468 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 236 455 IPR001754 GO:0004590|GO:0006207
Cca04g01873 468 Gene3D Aldolase class I 208 468 IPR013785 -
Cca04g01873 468 SMART OMPdecase_2 237 455 IPR001754 GO:0004590|GO:0006207
Cca04g01873 468 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 293 306 IPR018089 GO:0004590|GO:0006207
Cca04g01873 468 TIGRFAM pyrF: orotidine 5'-phosphate decarboxylase 238 456 IPR014732 GO:0004590|GO:0044205
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01873 Cca-Chr4 35672091 35676037 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01873 04 35672091 35676037 Cca04g01873 04 35672091 35676037 ECH