Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01872 ATGTCTATACAACATGAAAATCTTGATACAAATGATGTAATATGTCCACAAAAAAGACTAACAAATTTGATGCATGGTGCTGGAAACAAGTTTTGTGCTGATTGTGGAACTCCAGAACCAAAATGGGTATCTTCAAGTCTTGGAGTGTTTATATGCATCAAGTGTTCTGGCATACATAGAAGTTTAGGAGTCCACATATCAAAGGTTCTATCATTGAAGCTAGATGAATGGACAAATGAACAAGTTGATGCATTAGAAAAGTTGGGTGGAAATATATTATTAAATAAGAAGTACGAAGCTTTCCTCCCAAGTAGCATAAAAAAACCAAGACCAAATTCAACCATTGAAGAGCGCTCCGAATTTATTCGAAGAAAATATGACTTACAACAATTTATGGAAGGTGGTGACAATTTGTCATGCTCCATTGTGCCATCTCAAGGAAGAAATTTTTCACTTGCTCAAAGTAGCACTTCATACTACAATTCTTTTATGGACAAGAAACCATTTGAAAAGCAACCAACTAGAAATCGTATTGGGAATGCCTTTCGAAATAGTTGGGGAAGAAAAGATTATGAGCACAAGTCTGTAAAGAAGAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATATCGTTAGAGGCACTCACCTAGCTGTTCGAGATGTAATGACTAGTGACCCTTATGTCATCATTTCTTTGGGTCATCAATCAGTAAAAACACGTGTCATAAAGAATAATTTGAATCCAGTTTGGAATGAAAGCCTAATGTTATCAATTCCAAAGAATATTCCTCCTCTTAAAGTGCTTGTGTATGATAAGGATACATTTTCAACTGATGATTTTATGGGAGAAGCTGAAATAGATATTCAACCTCTAGTTATAGCTGCAAAGGCTTACGAAAAATCAACAATCAATGAATCCATGCAGCTTGGGAAATTTGTAGCAAATAACGACAACACCCTTGTTAGAGATGGTATCATATCCCTTGATGAAGGAAAAATCAAACAAGAAATATCAGTGAGGCTACAAAATGTTGAGAGAGGTGAGCTGGAGATTGAACTTGAGTGTGTTCCTCTAACTCAATAG 1101 0.3579 MSIQHENLDTNDVICPQKRLTNLMHGAGNKFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTNEQVDALEKLGGNILLNKKYEAFLPSSIKKPRPNSTIEERSEFIRRKYDLQQFMEGGDNLSCSIVPSQGRNFSLAQSSTSYYNSFMDKKPFEKQPTRNRIGNAFRNSWGRKDYEHKSVKKSTSLAGMVEFVGLIKVNIVRGTHLAVRDVMTSDPYVIISLGHQSVKTRVIKNNLNPVWNESLMLSIPKNIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSTINESMQLGKFVANNDNTLVRDGIISLDEGKIKQEISVRLQNVERGELEIELECVPLTQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01872 366 ProSiteProfiles C2 domain profile. 193 308 IPR000008 -
Cca04g01872 366 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 15 366 IPR044518 GO:0005096|GO:0005543
Cca04g01872 366 CDD ArfGap 20 126 - -
Cca04g01872 366 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Cca04g01872 366 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 207 301 IPR035892 -
Cca04g01872 366 SMART C2_3c 211 306 IPR000008 -
Cca04g01872 366 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 133 IPR001164 GO:0005096
Cca04g01872 366 CDD C2_ArfGAP 209 353 - -
Cca04g01872 366 Gene3D Arf GTPase activating protein 4 138 IPR038508 -
Cca04g01872 366 Gene3D C2 domain 209 366 IPR035892 -
Cca04g01872 366 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 15 366 - -
Cca04g01872 366 Pfam C2 domain 211 297 IPR000008 -
Cca04g01872 366 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Cca04g01872 366 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Cca04g01872 366 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Cca04g01872 366 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Cca04g01872 366 SMART arf_gap_3 17 142 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01872 Cca-Chr4 35611269 35618538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01872 17 366 C2H2 Transcription Factor Family AT4G21160 47.293 5.88e-117 341