Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g01870 | ATGATGTACAATGATCCTcagcaccagcaccagcaccagcaccaacagcaccagcaccagcaccagcagcaccagtaccagcaacaacagcagcagcaacaacagcaTTTCCACCACCAGCCGCCGGGTCCGGAGTTCCACCGCGGTCCTCCGCCACCGTCGCAACCGCCGCCGGTGATGCGCCAAGGCTCCGCCTCCTCCACGAATGTTGCCCCCGAGTTTCACCACCCCGGCCCCGGAGGACCACCTCCTCCTCATTACGATGTTCACGGTGATAGCCATGGTGCAAAAAGAATGCGAAAGCTTACTCAAAGGAAAGCAGTTGATTATACAAGCACAGTTGTGCGTTATATGCAGATTCGTATGTGGCAGCGGGATTCAAGGGATAGGACAGTACTGCAACCCACCCCGGCAGCAGCAATTGATATGTTGCCAGCAGTTGGCTATCCAGACAATCCATCTACAAGCTTTGCTGCAAAATTTGTTCATACATCCCTAAATAAAAATCGTTGCCCCATTAATCGCGTTCTTTGGACTCCAACAGGCCGACGACTTATTACTGGCTCACAGACTGGGGAATTCACTCTTTGGAATGGACAATCTTTTAATTTTGAAATGATTCTTCAGGCTCATGATCAAGCAATCAGATCCATGGTCTGGAGTCACAACGACAACTGGATGGTCTCTGGTGATGATGGAGGGGCAATAAAGTATTGGCAGAACAACATGAACAATGTTAAAGCCAACAAATCTGCTCATAAAGAATCAGTCCGTGACTTGAGTTTCTGTAGGACAGATTTGAAGTTTTGTTCGTGCTCTGATGATACCACAGTTAAAGTTTGGGACTTTGCACGTTGTCAAGAAGAGTGTTCATTAACTGGCCATGGTTGGGATGTGAAGAGTGTGGACTGGCATCCTACAAAATCCCTATTAGTATCAGGCAGGTGTGGGAAAGACAATCTTGTGAAACTTTGGGATGCTAAAACAGGGAGAGAGCTTTGCTCATTTCATGGCCACAAAAATACTGTGCTGTGTGTCAAATGGAATCAAAATGGTAATTGGGTGTTAACAGCTTCAAAGGATCAAATAATAAAGCTTTATGACATAAGAGCAATGAAGGAGCTTGAATCATTCCGTGGACATCGCAAGGATGTTACTGCTTTGGCATGGCATCCATTCCATGAAGAATACTTTGTCAGTGGGAGTTATGATGGTTCCATCTTCCATTGGCTTGTCGGACATGAAACTCCACAAATTGAAATTTCCAATGCTCATGATAATAATGTTTGGGACCTTGCATGGCATCCTATTGGATACCTTCTGTGCAGTGGCAGCAGTGATCATACAACCAAATTTTGGTGCAGAAATAGGCCAGGAGACACTGCACGTGATAGATTTAACACTGGCATGCAAGGATATCCTGACCAAAATCCTGTTGCTGGTCGTATGGGTGGTAATTTTCCTATAGCTGAAGGCCCAACAACTCCAGGACCATTTGCCCCTGGGTTGACTCGAAATGAGGGTACCATTCCAGGTGTTGGAGTTGCAATGCCCTTATCTATTCCTTCTCTTGACATGCCTCAAGGGGAGCAGAAGCAGCCACATCCTGTTTCAATGGGTGCTCCTCCTCTTCCCCCAGGTCCACATCCCTCTCTTCTTACTGCCAACCAACAACAACCATACCAACAAAATCCTCAGCAGATCCCTCAACATCAACACCAGGCTCTACCTCCGCAGATGGGTCCTTTGCCTATACCTCCAAATATGCCACAACTACAGCACCCTTCCCATTCGCCCATGGTCCCTCACCAACATTTGCCTCGCCCTCCGCCCCAAATGCCTATTGGCATGCCAGGATCTCTACCAGGGATTTCATcagtgccgacgtcacatgcaatgccaatgccaggtccaatgGGGATGCAAGGAGCGATGAATCAGATGGGTACTCCAATGCCACAAGGTCCTTATGTGGGCATGAATCAGATGCATTCAGGATCCTTGCCTACAAGTGGAGGGCCACCTCTTGGTGGTTTTCCAAGCAACTTACCTAATATGCAAGGGCCATCAAATGCCAGTTATCCTCAAGGTGCTTCATTTAACAGACCTCAAGGTGGGCAAATGCCTATGATGCAGGGGTATAATCCTTACCAGTCTGGTAATCAATCTGGGATGCCTCCAAACGCACAACCAGGGGCATCACACTCTCAAATGCCACCATAG | 2223 | 0.4453 | MMYNDPQHQHQHQHQQHQHQHQQHQYQQQQQQQQQHFHHQPPGPEFHRGPPPPSQPPPVMRQGSASSTNVAPEFHHPGPGGPPPPHYDVHGDSHGAKRMRKLTQRKAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAAAIDMLPAVGYPDNPSTSFAAKFVHTSLNKNRCPINRVLWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLTGHGWDVKSVDWHPTKSLLVSGRCGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSYDGSIFHWLVGHETPQIEISNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWCRNRPGDTARDRFNTGMQGYPDQNPVAGRMGGNFPIAEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSLDMPQGEQKQPHPVSMGAPPLPPGPHPSLLTANQQQPYQQNPQQIPQHQHQALPPQMGPLPIPPNMPQLQHPSHSPMVPHQHLPRPPPQMPIGMPGSLPGISSVPTSHAMPMPGPMGMQGAMNQMGTPMPQGPYVGMNQMHSGSLPTSGGPPLGGFPSNLPNMQGPSNASYPQGASFNRPQGGQMPMMQGYNPYQSGNQSGMPPNAQPGASHSQMPP | 740 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g01870 | 740 | Gene3D | - | 116 | 315 | IPR015943 | GO:0005515 | |
| Cca04g01870 | 740 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 208 | 240 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 250 | 282 | - | - | |
| Cca04g01870 | 740 | MobiDBLite | consensus disorder prediction | 90 | 105 | - | - | |
| Cca04g01870 | 740 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 336 | 377 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | MobiDBLite | consensus disorder prediction | 551 | 574 | - | - | |
| Cca04g01870 | 740 | Gene3D | - | 316 | 465 | IPR015943 | GO:0005515 | |
| Cca04g01870 | 740 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 336 | 370 | - | - | |
| Cca04g01870 | 740 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 208 | 240 | - | - | |
| Cca04g01870 | 740 | CDD | WD40 | 170 | 453 | - | - | |
| Cca04g01870 | 740 | MobiDBLite | consensus disorder prediction | 44 | 59 | - | - | |
| Cca04g01870 | 740 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 422 | 453 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | PANTHER | WD40 REPEAT PROTEIN | 84 | 732 | IPR045245 | GO:0031124 | |
| Cca04g01870 | 740 | SMART | WD40_4 | 414 | 454 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | SMART | WD40_4 | 201 | 240 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | SMART | WD40_4 | 154 | 198 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | SMART | WD40_4 | 329 | 368 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | SMART | WD40_4 | 285 | 326 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | SMART | WD40_4 | 243 | 282 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | SMART | WD40_4 | 371 | 411 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | MobiDBLite | consensus disorder prediction | 1 | 105 | - | - | |
| Cca04g01870 | 740 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 422 | 453 | - | - | |
| Cca04g01870 | 740 | MobiDBLite | consensus disorder prediction | 515 | 587 | - | - | |
| Cca04g01870 | 740 | Pfam | WD domain, G-beta repeat | 206 | 239 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | Pfam | WD domain, G-beta repeat | 424 | 453 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | Pfam | WD domain, G-beta repeat | 331 | 368 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | Pfam | WD domain, G-beta repeat | 374 | 410 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | Pfam | WD domain, G-beta repeat | 251 | 282 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | Pfam | WD domain, G-beta repeat | 290 | 326 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 378 | 410 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | MobiDBLite | consensus disorder prediction | 683 | 740 | - | - | |
| Cca04g01870 | 740 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 378 | 410 | - | - | |
| Cca04g01870 | 740 | MobiDBLite | consensus disorder prediction | 20 | 39 | - | - | |
| Cca04g01870 | 740 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 250 | 282 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 166 | 198 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | MobiDBLite | consensus disorder prediction | 671 | 740 | - | - | |
| Cca04g01870 | 740 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 292 | 335 | IPR001680 | GO:0005515 | |
| Cca04g01870 | 740 | SUPERFAMILY | WD40 repeat-like | 162 | 453 | IPR036322 | GO:0005515 |