Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g01869 | ATGGTTTTCATTGGGAGCCATAGCCAATTGATTGATAGTGTGTGCACAATTGTAGTCAAGGGTAGTTGGGGCAATCTATTGAAGGTGAATAAGAATTCCTCTGCTCTCACTTCTTCTACTATTCACCAGGTACTTTTGCAGCTCTCACTATATGGTTATGGGCTCTCTCATTCCTTCCCATTCTTCAAATGGCTTGATTCCATCCCACATTATAACCATTCCTTGCAATGTTCATGGGCCATGATTCACATCCTCACTGAACATAAGCATTTCAAAACTGCACAACGTATGCTTGAAAACATTGCCGATAAAGATTTACTTTCATCACCTTCAGTTTTGAGCACTTTAGTGAGGACTCATGACAAGCCAGAATTTAATTCTCAAGTGTTGAGTTGGCTTGTCATACATTATGCCAAGTCAAAGATGACACAAGATGCAATTCAAGTTTTCGAGCAGATGAGGTTACATGAAGTCAAACCTCATTTGCATGCTTGTACTGTTCTTTTGAATTCCTTGTTGAAGGATGGGGTTACTCACATGGTGTGGAAAATATACAAGAGAATGGTTCAAGTTGGGGTTGTTCCCAATATGTACATCTACAATTGTTTATTCCATGCCTGTTCCAAATCAGGAGATCTGGAAAGGGCAGAACAATTATTAAATGAGATGGACGTAAATGGTGTGCTTCCTGATATCTTCACATACAATACTTTGATATCATTATATAGCAGGAATGGTATGCACTATGAGGCTTTATCAATCCAGGAAAGAATGGGAAGAGATGGGATAAACCTTGATATTGTTAGTTATAACTCTCTTATTTATGGATTTTGCAAAGAAGGTAGGATGAGAGAAGCTATGAGGATGTTTAGCGAAATAAAAAATGCAACTCCCAATCATGTGACATATACTACACTAATTGATGGTTATTGTAAAACAAATGAACTGGAGCAAGCTCTGAAAATGTGGGAACTGATGGAGGCTAAGGGATTGTACCCTGGAGTTGTTACTTATAATTCAATTTTGCGTAAGCTGTGTCAAGATGGCAGGATAAGGGATGCAAACAAACTCTTGAATCAGATGAATGAAAGGAAAGTTCAAGCTGACAATATCACATGCAACACACTTATAAATGCTTACTGCAAGATTGGAGATTTGAAATCTGCTTTGAAATTTAAGAACAAGATGTTAGAAGCTGGACTAAAACCTGATCCATTTACATATAAGGCTCTGATTCATGGGTTCTGCAAGACGAATGACCTGGAAAGCGCAAAGGAGTTAATGTTCAACATGCTTGATGCTGGTTTTACCCCCAGTTATTGCACATACTCATGGATTGTAGATGGATACTCTAAGAAAGACAATATGGATGTAGTTTTAGCATTGCCAGATGAGTTTCTGAGTAGAGGTCTTTGTCTTGATGTTTCAGTATACAGGGCCCTGATAAGAAGGGCATGCAAGGTAGAAAGGACTGAATGTGCGGAAAAGTTATTCAATCATATGGAAGGAAAGGGTATATCAGGTGACAGTGTTATCTACACCAGTCTTGCATATGCGTATTGGAAAGTGGGGAACACAGGTGCTGCCTCAAGTATGTTAGAAGAGATGGCTAGGAGAAGGTTGATGATCACAGTCAAACTTTATAGATGCTTTAGTACTTCTGATACTAGTGAAAACAAAGTGTTACAGATCTTCTGGAATCATGTGGTGGATAGGGGTCTGATGTCGAGAAATACAATGAACAAGATACAGCAGATACTGATGTGA | 1767 | 0.3871 | MVFIGSHSQLIDSVCTIVVKGSWGNLLKVNKNSSALTSSTIHQVLLQLSLYGYGLSHSFPFFKWLDSIPHYNHSLQCSWAMIHILTEHKHFKTAQRMLENIADKDLLSSPSVLSTLVRTHDKPEFNSQVLSWLVIHYAKSKMTQDAIQVFEQMRLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKRMVQVGVVPNMYIYNCLFHACSKSGDLERAEQLLNEMDVNGVLPDIFTYNTLISLYSRNGMHYEALSIQERMGRDGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKNATPNHVTYTTLIDGYCKTNELEQALKMWELMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLNQMNERKVQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNDLESAKELMFNMLDAGFTPSYCTYSWIVDGYSKKDNMDVVLALPDEFLSRGLCLDVSVYRALIRRACKVERTECAEKLFNHMEGKGISGDSVIYTSLAYAYWKVGNTGAASSMLEEMARRRLMITVKLYRCFSTSDTSENKVLQIFWNHVVDRGLMSRNTMNKIQQILM | 588 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g01869 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 369 | 403 | IPR002885 | - | |
| Cca04g01869 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 404 | 438 | IPR002885 | - | |
| Cca04g01869 | 588 | Gene3D | Tetratricopeptide repeat domain | 366 | 431 | IPR011990 | GO:0005515 | |
| Cca04g01869 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 161 | 195 | IPR002885 | - | |
| Cca04g01869 | 588 | Coils | Coil | 351 | 371 | - | - | |
| Cca04g01869 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 334 | 368 | IPR002885 | - | |
| Cca04g01869 | 588 | TIGRFAM | PPR: pentatricopeptide repeat domain | 477 | 509 | IPR002885 | - | |
| Cca04g01869 | 588 | TIGRFAM | PPR: pentatricopeptide repeat domain | 301 | 334 | IPR002885 | - | |
| Cca04g01869 | 588 | TIGRFAM | PPR: pentatricopeptide repeat domain | 268 | 294 | IPR002885 | - | |
| Cca04g01869 | 588 | TIGRFAM | PPR: pentatricopeptide repeat domain | 198 | 232 | IPR002885 | - | |
| Cca04g01869 | 588 | TIGRFAM | PPR: pentatricopeptide repeat domain | 336 | 369 | IPR002885 | - | |
| Cca04g01869 | 588 | TIGRFAM | PPR: pentatricopeptide repeat domain | 406 | 439 | IPR002885 | - | |
| Cca04g01869 | 588 | TIGRFAM | PPR: pentatricopeptide repeat domain | 371 | 404 | IPR002885 | - | |
| Cca04g01869 | 588 | TIGRFAM | PPR: pentatricopeptide repeat domain | 164 | 196 | IPR002885 | - | |
| Cca04g01869 | 588 | TIGRFAM | PPR: pentatricopeptide repeat domain | 233 | 266 | IPR002885 | - | |
| Cca04g01869 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 474 | 508 | IPR002885 | - | |
| Cca04g01869 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 126 | 160 | IPR002885 | - | |
| Cca04g01869 | 588 | Pfam | Pentacotripeptide-repeat region of PRORP | 135 | 285 | IPR033443 | - | |
| Cca04g01869 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 299 | 333 | IPR002885 | - | |
| Cca04g01869 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 196 | 230 | IPR002885 | - | |
| Cca04g01869 | 588 | Gene3D | Tetratricopeptide repeat domain | 79 | 246 | IPR011990 | GO:0005515 | |
| Cca04g01869 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 231 | 265 | IPR002885 | - | |
| Cca04g01869 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 266 | 296 | IPR002885 | - | |
| Cca04g01869 | 588 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 509 | 543 | IPR002885 | - | |
| Cca04g01869 | 588 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 6 | 583 | - | - | |
| Cca04g01869 | 588 | Gene3D | Tetratricopeptide repeat domain | 432 | 587 | IPR011990 | GO:0005515 | |
| Cca04g01869 | 588 | Gene3D | Tetratricopeptide repeat domain | 247 | 365 | IPR011990 | GO:0005515 | |
| Cca04g01869 | 588 | Pfam | PPR repeat family | 369 | 417 | IPR002885 | - | |
| Cca04g01869 | 588 | Pfam | PPR repeat family | 298 | 346 | IPR002885 | - | |
| Cca04g01869 | 588 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 6 | 583 | - | - | |
| Cca04g01869 | 588 | SUPERFAMILY | TPR-like | 269 | 427 | IPR011990 | GO:0005515 | |
| Cca04g01869 | 588 | Pfam | Pentatricopeptide repeat domain | 496 | 541 | IPR002885 | - |