Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01867 ATGGCTATGACTATGGACTCCCAGTTTCATGTTTTGGCTGTTGATGACAGTCTCATTGACAGAATGTTGATTGAGAGGCTCCTAAAAACCTCTTCCTTTCATGTTACTACAGTGGACTCTGCCACCAAGGCTTTGAAATTTCTTGGTTTGGTTGAAGATGAATTGAGGACTTTTAACTCTTCTGTTGCATCAGATATTCATCAGGATGTAGATGTAAATCTGATCATAACGGACTACTGCATGCCAGGAATGACCGGCTACGATCTGCTGAGAAAAATCAAGGAATCTAGCTTTCTTAAAAACATACCAGTTGTGATTATGTCTTCAGAGAATGTACCCTCAAGGATTAACAGATGCTTGGAGGAGGGAGCAGAAGAATTCTTTCTAAAACCAGTTCAACAGGCAGATGTAAACAAGCTCAAGCCACATTTAATGAAACCAAGAGCTATGGAAGAGCAAGTTGAACCCTTAAATAACAAAAAGAATGACATGGAAGAAATTCATTCCCTAAATAAGACCAGAATAAAATGTAGCAGTTAA 540 0.387 MAMTMDSQFHVLAVDDSLIDRMLIERLLKTSSFHVTTVDSATKALKFLGLVEDELRTFNSSVASDIHQDVDVNLIITDYCMPGMTGYDLLRKIKESSFLKNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQADVNKLKPHLMKPRAMEEQVEPLNNKKNDMEEIHSLNKTRIKCSS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01867 179 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 176 IPR045279 GO:0009736
Cca04g01867 179 SUPERFAMILY CheY-like 8 153 IPR011006 -
Cca04g01867 179 SMART REC_2 9 144 IPR001789 GO:0000160
Cca04g01867 179 Coils Coil 170 179 - -
Cca04g01867 179 CDD REC_typeA_ARR 11 140 - -
Cca04g01867 179 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 2 176 - -
Cca04g01867 179 Pfam Response regulator receiver domain 11 137 IPR001789 GO:0000160
Cca04g01867 179 ProSiteProfiles Response regulatory domain profile. 10 145 IPR001789 GO:0000160
Cca04g01867 179 Gene3D - 10 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01867 Cca-Chr4 35492014 35493972 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca04g01867 Response_reg 5.7e-19 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01867 04 35492014 35493972 Cca10g01722 10 31389098 31403835 PCT