Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g01863 | ATGGCAGAAACCGTAGTTTTCTTcgtcgccgccgccgccgccgctgccgGAGAACCTCCTCTCTCACGGTTCTTCAATCGAACCTTTCTCTCCGTCAAGCAGCACCTCCTCGCTCACATTTTCCGCCTCCAAAACGACGCCGACGACGTCGTTTTCCGTTGCAGGATTTGCCGTGACGTGGATGCGGCCTTTGGGAAAAAATGCGAAGTGAACGCCGGAGATTGTTCGCCAAACGACAGGGGTTTTGGCGCCGACGACAATGGCCGGCACGCCGTTTTCAATGCGCTGGATACTATGCTTAAGGACAGTTTAGAGCGTCTGAAGATAATGAGGGAAAACCTATGTTTGGTAAAGATAGGTCTAACTATGGGATATGCACGTGAATCTAAGTATGCTGAAAATACAGCCACTATTAGGTCTTTGTGCTTGGATGGTAAGTTGGGAGCAGCTTTTTGGCTTCAGAGAAAAATGGTGCAGAAAGGTGTTGTTCCTGATGCGTTTACCCACAACCATATTGTAAATGGGCTGTGCAAAATTGGTCTTCTGGAGAAGGCAGATTGGGTTGTTAAAGAGATGTTAGAATTTGGTCCTCGTCCCAACTGTGCCACTTATAACACTTTGATTAAGGGCTATTGTGCTGTTAATAGTGTGGATAAGGCTTTGTATCTGTTCTCCGCCATGGCCAATGCTGGGATTCTGCCAAACAGGGTTACTTGTAACGTGCTGGTGCATGCACTGTGTGAGAAAGGTTTTGTGAAGGAAGCTAAAAGGATGCTTGAAGCAATATTAAAGGATAATGACGAGAAAGATATACCCGATTTAGTTACCTCTACTATATTTATGGATAGTTACTTTAAGAATGGAGCCATTGTTCAGGCTCTTAGTCATTGGAGTCACATGCTTCAAAATTGTACTAAAGTTGATGTTGTAGCTTATAATGTTCTTATCAATGGATTTTGCAAGAGTCTACAAATGCACCTTGCCTATGGATATGCATGTGAGATGTTTAAGAAAGGTTTGCTTCCTGATGTTTTTACTTATAATATTCTCATTGGTGCTCTTTGTAAGGAAGGCAAAATTAGCGAGGCTTGCTATACCCTTGGTGTTATGTCAAATATGGGGATTATGCCTGATCAAATAACTTACCAGACTGTGATTCGAGGCCTGTGTTTTGATGGAGAGATTGTTAGAGCAAAAAACTTGCTTTCGTGTATGTTGAACAATTTAATGGTGCCCAAGCCTTTAATATGGAACCTAATAATTGACTTATATGGGAGATATAATGATCTTAGTAATGCATTTTTAACAAGAGATCAGATGCTGGCTTTTGGCGTTCTCCCAAATGTATTTACTTATAATGCTTTAATCCTTGCACAAGTAAAGAGTGAAAATTTCTATGGTGCTTGCTCTCTGAAGGAAGAGATGATATCAAAAGGTCTCTGTCCTGATGTAGTTACGTATAATTTGTTGATAGGTGCTGCTTGTAATTTAGGTCGTCCTGATTTTGCACTTCAATTACATAAGGAGATGGTGCAGAGGGGGTATGAACCAGATTCAATAACTTTAACAGAACTTGTTAGGGGGTTCTGTATTAGAAGTAACATGAAAGAGGCAGAAGAGCTCTATGCCAAAATACTAAAATCTGGTTTATTGAATGATCATGTTCCAGTGCAGATCCTTTTTAATAAGTTCTGCAAATTGGAGGAACCAGTTAGAGCATTTAACATCTATCAAGACTTGTTGGAAAGTAAAAAAGCTAGTCGTCCTTACTAA | 1773 | 0.3988 | MAETVVFFVAAAAAAAGEPPLSRFFNRTFLSVKQHLLAHIFRLQNDADDVVFRCRICRDVDAAFGKKCEVNAGDCSPNDRGFGADDNGRHAVFNALDTMLKDSLERLKIMRENLCLVKIGLTMGYARESKYAENTATIRSLCLDGKLGAAFWLQRKMVQKGVVPDAFTHNHIVNGLCKIGLLEKADWVVKEMLEFGPRPNCATYNTLIKGYCAVNSVDKALYLFSAMANAGILPNRVTCNVLVHALCEKGFVKEAKRMLEAILKDNDEKDIPDLVTSTIFMDSYFKNGAIVQALSHWSHMLQNCTKVDVVAYNVLINGFCKSLQMHLAYGYACEMFKKGLLPDVFTYNILIGALCKEGKISEACYTLGVMSNMGIMPDQITYQTVIRGLCFDGEIVRAKNLLSCMLNNLMVPKPLIWNLIIDLYGRYNDLSNAFLTRDQMLAFGVLPNVFTYNALILAQVKSENFYGACSLKEEMISKGLCPDVVTYNLLIGAACNLGRPDFALQLHKEMVQRGYEPDSITLTELVRGFCIRSNMKEAEELYAKILKSGLLNDHVPVQILFNKFCKLEEPVRAFNIYQDLLESKKASRPY | 590 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g01863 | 590 | Pfam | PPR repeat | 160 | 192 | IPR002885 | - | |
| Cca04g01863 | 590 | Pfam | PPR repeat | 373 | 405 | IPR002885 | - | |
| Cca04g01863 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 200 | 234 | IPR002885 | - | |
| Cca04g01863 | 590 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 20 | 584 | - | - | |
| Cca04g01863 | 590 | Gene3D | Tetratricopeptide repeat domain | 121 | 268 | IPR011990 | GO:0005515 | |
| Cca04g01863 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 483 | 517 | IPR002885 | - | |
| Cca04g01863 | 590 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 20 | 584 | - | - | |
| Cca04g01863 | 590 | Pfam | PPR repeat | 416 | 445 | IPR002885 | - | |
| Cca04g01863 | 590 | Pfam | PPR repeat | 450 | 480 | IPR002885 | - | |
| Cca04g01863 | 590 | Gene3D | Tetratricopeptide repeat domain | 423 | 589 | IPR011990 | GO:0005515 | |
| Cca04g01863 | 590 | Gene3D | Tetratricopeptide repeat domain | 269 | 422 | IPR011990 | GO:0005515 | |
| Cca04g01863 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 378 | 412 | IPR002885 | - | |
| Cca04g01863 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 308 | 342 | IPR002885 | - | |
| Cca04g01863 | 590 | Pfam | PPR repeat family | 199 | 247 | IPR002885 | - | |
| Cca04g01863 | 590 | Pfam | PPR repeat family | 482 | 530 | IPR002885 | - | |
| Cca04g01863 | 590 | Pfam | PPR repeat family | 308 | 356 | IPR002885 | - | |
| Cca04g01863 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 343 | 377 | IPR002885 | - | |
| Cca04g01863 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 518 | 552 | IPR002885 | - | |
| Cca04g01863 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 448 | 482 | IPR002885 | - | |
| Cca04g01863 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 235 | 269 | IPR002885 | - | |
| Cca04g01863 | 590 | TIGRFAM | PPR: pentatricopeptide repeat domain | 450 | 484 | IPR002885 | - | |
| Cca04g01863 | 590 | TIGRFAM | PPR: pentatricopeptide repeat domain | 167 | 201 | IPR002885 | - | |
| Cca04g01863 | 590 | TIGRFAM | PPR: pentatricopeptide repeat domain | 237 | 264 | IPR002885 | - | |
| Cca04g01863 | 590 | TIGRFAM | PPR: pentatricopeptide repeat domain | 310 | 344 | IPR002885 | - | |
| Cca04g01863 | 590 | TIGRFAM | PPR: pentatricopeptide repeat domain | 345 | 378 | IPR002885 | - | |
| Cca04g01863 | 590 | TIGRFAM | PPR: pentatricopeptide repeat domain | 203 | 235 | IPR002885 | - | |
| Cca04g01863 | 590 | TIGRFAM | PPR: pentatricopeptide repeat domain | 485 | 519 | IPR002885 | - | |
| Cca04g01863 | 590 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 165 | 199 | IPR002885 | - |