Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01860 ATGATGGCTTCATCTTCTTTGGTTGTTGTTGGCCCTCTCCACCATACTCCTCAGAACGGTTACAAAGTGTGGGAAGATCCTTCTTTCATCAAGTGGAGGAAAAGGGACCCTCATGTTACCTTGCATTGTCATGATTCTCTTGAAGGATCTCTTAAATATTGGTATCAGCGCAACAAAGTGGATTTTTTGGCTTCCCAGTCTGCTGTTTGGAATGATGATGCTGTTCAGGGGTCTCTTGATTGTGCTGCATTTTGGGTCAAAGAATTGCCTTTTGTTAAGTCCTTGTCTGGATATTGGAAATTTTTCGTTGCTGACAGTCCCAACAATGTCCCTACTAATTTTTATGGAAGCGAGTTTCAGGATTCAGAGTGGAAAACTTTGCCTGTTCCTTCAAATTGGCAATTACATGGATTTGACTGTCCTATATATTCAAACGTGGTGTATCCATTTCCACTAGATCCTCCTTTTGTTCCAGTGGAAAATCCTACAGGCTGTTACAGAACATACTTCCAGATTCCTAAAGAATGGGAGGGTAGAAGAATTTTGTTGCATTTTGAAGCAGTTGATTCTGCCTTTTGTGCATGGATAAATGGGCATCCTGTAGGATATAGCCAAGATAGTAGACTACCTGCAGAGTTTGAAATCACTGATTTTTGTCATCCATGTGGTTCAGACCTTAAGAATGTTTTAGCAGTTCAAGTGTTTAGATGGAGTGATGGTTCTTACCTTGAAGACCAGGATCAATGGAGGTTATCTGGCATCCACCGTGATGTTCTTCTTATGGCAAAGCCAGAGGTATTTATTACTGACTATTTTTTCAAATCAAACCTCGCAGAAGATTTTTCTTATGCAGAGATACTGGTTGATGTAAAAATAGATAAATTGCAAGAGACATCCAAGGATAATGTTCTTACAAACTATTCTATAGAAGCTACATTGTTTGATTCTGCAAGCTGGTACAACTCTGACGGGAATCCTGATCTCCTTTCATCTAATGTGGCAGACATAAAGCTCCAACCAACAAATGATTCACCATTAGGGTTTCATGGCTATGTGCTTATGGGGAAGCTGCAATCACCGAAGCTTTGGTCCGCAGAGAAACCATATCTTTACACCCTAGTTGTTGTCTTGAAAGATCGATTTGGTCGTGTTGTTGACTGTGAATCTTGTCCGGTGGGATTTAGAAAAGTATCTAAAGCCCACAAACAGCTGCTTGTTAATGGTCATGCTGTTGTAATAAGAGGTGTGAACAGGCATGAGCATCATCCACAAGTGGGAAAGGCAAGCATAGAATCCTGCATGATCAAGGATTTGGTCTTAATGAAGCAAAACAATATTAATGCTGTGAGGAACAGCCATTATCCCCAGCATCCACGTTGGTATGAGCTATGTGATTTGTTTGGCATGTATATGATAGATGAAGCGAATATTGAGACACATGGTTTTGACCATTCTACACATCTCAAGCATCCTACTAAGGAACCAATTTGGGCAACTGCAATGCTAGATCGTGTGATCGGCATGGTTGAGAGAGATAAAAATCACACATGCATTATTTCCTGGTCTTTAGGGAATGAATCTGGATTTGGATCAAATCATTTTGCTTTAGCCGGTTGGATTCGAGGAAGAGATCCATCACGGGTATTACATTACGAAGGAGGTGGATCCAGGACTCCATGCACCGATATTGTGTGCCCTATGTATATGCGTGTTTGGGACATGTTGAAAATTGCAAATGATCCAACTGAAACACGTCCTCTGATATTGTGCGAGTATTCACATGCAATGGGAAACAGTAATGGTAATCTACATATATATTGGGAAGCAATTGACAACACATTTGGACTCCAAGGAGGCTTTATTTGGGATTGGGTTGATCAGGCCCTGGTGAAGGTTTATGCAGATGGTACAAAGCATTGGGCATACGGAGGTGAATTCGGGGATGTTCCCAATGACTTGAATTTCTGTTTGAATGGCCTCACATTTCCTGATCGAACACCTCATCCTGTTTTACACGAGGTTAAGTACTTATACCAACCAATCAAGGTGACATTAAATGAAGGGAAATTGGAGATAAAAAATGCTCATTTTTTCCAAACAACTGATGGATTGGAGTTCAGCTGGTATATTTCTGCAGATGGATACAATCTTGGATCTGGTATTTTGGACCTTGCCCCTATAAAGCCCCAGAGTAGTTATGCGATTGATTGGCAATCAGGTCCATGGTATTCTTTATGGGCTTCATCATCAGCAGAAGAACTATTCCTGACTATAACGGCTAAACTTTTGAACTCCACACGATGGGTTGAAGCTGGTCATATTGTTTCATCTACTCAAGTTCAACTGCCTACCAGGAGAAACATCGATCCTCGTGCTATCAGTATTAGTGGTGACACTCTGGTTGCTGAAACAGAAGGAGATACAATCAAAGTCAAACAGCAAGATGTTTGGGATTTAACATTGAACACTAAAACAGGTTTAGTTGAAAGCTGGAAGGTTAAAGGAGTACATGTTATGAAAAAAGGCATCTTCCCATGTTTCTGGCGAGCTCCTACCGATAATGATAAAGGAGGAGGACAAGCCAGTTATTCATCCAGGTGGAAAGACGCTGGAATGGACTGCCTCCACTTTAATACTGAGAGCTGCTCTGTGCAAAATGTGACAGAGAACATGGTTAGAATATTGGTGGTTTTTCTTGGTGTTACAAAGGGTGAGGAGGGTTCAATCTCTAACCAAGACAAGTCAAAGGTTCTATTTACTACAGAAATGACATATACAATTTATGCTTCTGGGGATGTCATCATAGAATGCAATGTAAAACCAAACCCTGATCTTCCTCCTTTGCCACGCGTGGGAATCGAGTTAAATGTGGAGAAGTCTTTGGATCAAGTAACTTGGTATGGAAGAGGACCATTTGAGTGTTATCCGGATCGAAAAGCTGCAGCCCAGGTTGCAATCTATGAACATAATGTTCGTGAATTGCATGTTCCTTATATTGTTCCTGGGGAATCTTCAGGTAGGGCTGATGTTAGGTGGGCGACATTCAGAAACAAAAATGGTTTTGGAATATATGCTTCTAAGTATGGCAGCTCTCCCCCAATGCAAATGAGTGCAAGCTACTATAGCACCTCAGAACTTGACCGTGCCACACACAATGAAGAGCTCATTGAAGGAGATAACATTGAGATTCATCTGGATCACAAGCACATGGGATTGGGTGGAGATGATAGTTGGTCGCCATGTGTCCATGAACAGTATTTGATTCCTCCTGTGTCATACACATTCTCTGTTAGGTTGTGTCCAGTAACTCCAACCACTACTGGTTATGATATCTACAAATCCCAGTTTCAAAACTCTTGA 3360 0.4122 MMASSSLVVVGPLHHTPQNGYKVWEDPSFIKWRKRDPHVTLHCHDSLEGSLKYWYQRNKVDFLASQSAVWNDDAVQGSLDCAAFWVKELPFVKSLSGYWKFFVADSPNNVPTNFYGSEFQDSEWKTLPVPSNWQLHGFDCPIYSNVVYPFPLDPPFVPVENPTGCYRTYFQIPKEWEGRRILLHFEAVDSAFCAWINGHPVGYSQDSRLPAEFEITDFCHPCGSDLKNVLAVQVFRWSDGSYLEDQDQWRLSGIHRDVLLMAKPEVFITDYFFKSNLAEDFSYAEILVDVKIDKLQETSKDNVLTNYSIEATLFDSASWYNSDGNPDLLSSNVADIKLQPTNDSPLGFHGYVLMGKLQSPKLWSAEKPYLYTLVVVLKDRFGRVVDCESCPVGFRKVSKAHKQLLVNGHAVVIRGVNRHEHHPQVGKASIESCMIKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFDHSTHLKHPTKEPIWATAMLDRVIGMVERDKNHTCIISWSLGNESGFGSNHFALAGWIRGRDPSRVLHYEGGGSRTPCTDIVCPMYMRVWDMLKIANDPTETRPLILCEYSHAMGNSNGNLHIYWEAIDNTFGLQGGFIWDWVDQALVKVYADGTKHWAYGGEFGDVPNDLNFCLNGLTFPDRTPHPVLHEVKYLYQPIKVTLNEGKLEIKNAHFFQTTDGLEFSWYISADGYNLGSGILDLAPIKPQSSYAIDWQSGPWYSLWASSSAEELFLTITAKLLNSTRWVEAGHIVSSTQVQLPTRRNIDPRAISISGDTLVAETEGDTIKVKQQDVWDLTLNTKTGLVESWKVKGVHVMKKGIFPCFWRAPTDNDKGGGQASYSSRWKDAGMDCLHFNTESCSVQNVTENMVRILVVFLGVTKGEEGSISNQDKSKVLFTTEMTYTIYASGDVIIECNVKPNPDLPPLPRVGIELNVEKSLDQVTWYGRGPFECYPDRKAAAQVAIYEHNVRELHVPYIVPGESSGRADVRWATFRNKNGFGIYASKYGSSPPMQMSASYYSTSELDRATHNEELIEGDNIEIHLDHKHMGLGGDDSWSPCVHEQYLIPPVSYTFSVRLCPVTPTTTGYDIYKSQFQNS 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01860 1119 Gene3D Immunoglobulins 265 395 IPR013783 -
Cca04g01860 1119 SUPERFAMILY beta-Galactosidase/glucuronidase domain 266 395 IPR036156 -
Cca04g01860 1119 Pfam Beta-galactosidase, domain 4 690 783 IPR032312 -
Cca04g01860 1119 PRINTS Glycosyl hydrolase family 2 signature 188 203 IPR006101 GO:0004553|GO:0005975
Cca04g01860 1119 PRINTS Glycosyl hydrolase family 2 signature 406 420 IPR006101 GO:0004553|GO:0005975
Cca04g01860 1119 PRINTS Glycosyl hydrolase family 2 signature 437 455 IPR006101 GO:0004553|GO:0005975
Cca04g01860 1119 PRINTS Glycosyl hydrolase family 2 signature 512 527 IPR006101 GO:0004553|GO:0005975
Cca04g01860 1119 PRINTS Glycosyl hydrolase family 2 signature 585 600 IPR006101 GO:0004553|GO:0005975
Cca04g01860 1119 Gene3D - 13 264 - -
Cca04g01860 1119 SUPERFAMILY Galactose-binding domain-like 92 264 IPR008979 -
Cca04g01860 1119 Gene3D Glycosidases 397 677 - -
Cca04g01860 1119 Gene3D Immunoglobulins 679 787 IPR013783 -
Cca04g01860 1119 Pfam Beta galactosidase small chain 815 1099 IPR004199 GO:0004565|GO:0005975|GO:0009341
Cca04g01860 1119 Pfam Glycosyl hydrolases family 2, sugar binding domain 93 264 IPR006104 GO:0004553|GO:0005975
Cca04g01860 1119 SUPERFAMILY Galactose mutarotase-like 798 1102 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cca04g01860 1119 SMART Bgal_small_N_2 810 1100 IPR004199 GO:0004565|GO:0005975|GO:0009341
Cca04g01860 1119 Pfam Glycosyl hydrolases family 2, TIM barrel domain 401 682 IPR006103 GO:0004553|GO:0005975
Cca04g01860 1119 SUPERFAMILY (Trans)glycosidases 400 679 IPR017853 -
Cca04g01860 1119 ProSitePatterns Glycosyl hydrolases family 2 signature 1. 447 472 IPR023230 -
Cca04g01860 1119 Gene3D - 796 1101 IPR014718 GO:0030246
Cca04g01860 1119 PANTHER BETA-GALACTOSIDASE 12 1104 - -
Cca04g01860 1119 ProSitePatterns Glycosyl hydrolases family 2 acid/base catalyst. 512 526 IPR023232 -
Cca04g01860 1119 PANTHER GLYCOSIDE HYDROLASE FAMILY 2 PROTEIN 12 1104 - -
Cca04g01860 1119 Pfam Glycosyl hydrolases family 2 266 395 IPR006102 GO:0004553|GO:0005975
Cca04g01860 1119 SUPERFAMILY beta-Galactosidase/glucuronidase domain 675 784 IPR036156 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01860 Cca-Chr4 35100445 35123892 Tandem