Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01853 ATGAAAACCCCACCAATACTCACTCCTATAGTGCTCTTCCTCCTCTTCTCCCTAGCCAAAGGGGTGAGCCCCAAGTGTGAAGGGCAAGAGCATGGCTCAACCCTTAAAGTGTTCCATGTGTTGAGCCCATGTTCCCCATTTAGGCCATCAAGGGCAATGTCATGGGAAGAGAGTGTCCTACAGCTAGAGGCCAAGGACCAGGGCAGGATGCAGTACCTGTCCAGCTTGGTGGCTAGGAGATCAATTGTCCCAATTGCCTCAGGCAGGCAAATCACACAGAGCCCTACATACATTGTGAAGGCCAAGATTGGTACCCCAGCTCAGACCCTTCTCTTGGCCATGGACACTAGCAATGATGCTGCTTGGCTCCCTTGCACTGCTTGTGTTGGTTGCTCAACTTCCACACCCTTTGCACCTGCCAAGTCCACCACTTTTAGGACTGTTAGATGTGCTTCTCCTCGGTGCAAACAGGTACCTAACCCCACTTGCGGTGGAAGCGCGTGTGCATTCAACTTCACTTATGGCACTTCCTCTGTGGCAGCTAACCTGGTCCAAGACACAGTGACCCTAGCCACTGACCCAGTTCCAGCCTACACCTTTGGCTGCATTCAAAAGGCAACAGGGACCTCAGTACCACAACAAGGGCTCTTGGGCCTGGGCCGAGGCCCGTTGTCACTCTTGGCCCAAACCCAAAAGCTCTACCAATCTACATTCTCCTACTGCTTGCCCAGCTTCAAGACACTCAACTTCAGTGGCTCACTCAGACTTGGGCCTGTGGCCCAGCCCAAGAGGATCAAGTTTACCCCTCTTCTCAAAAATCCTAGAAGATCATCACTCTACTATGTGAACTTGGTGGCTATTAGAGTTGGTCGGAGAATTGTTGATATTCCTCCTGAGGCTTTAGCTTTCAACCCAACCACCGGAGCAGGCACCATTTTTGATTCTGGCACGGTGTTCACCCGGCTGGTCGAACCGGCCTACACCGCCGTCCGAAACGAGTTCCGGCGACGAGTTGCCGTGGGCAAGAAACTCACCGTGACAAGGCTAGGAGGGTTTGACACATGCTACACAGTCCCAATAGTTGCACCAACAATAACATTTATGTTCTCCGGCATGAACGTGACACTGCCACCGGACAACATCCTCATACATAGCACCGTCGGCAGCGTCACGTGCTTGGCCATGGCGGCGGCGCCGGATAACGTGAACTCCGTCTTGAACGTGATCGCCAACATGCAACAACAAAACCACCGTGTGCTCTACGACGTGCCCAACTCAAGGCTAGGCGTTGCTCGTGAGCTTTGCACCTAA 1311 0.5301 MKTPPILTPIVLFLLFSLAKGVSPKCEGQEHGSTLKVFHVLSPCSPFRPSRAMSWEESVLQLEAKDQGRMQYLSSLVARRSIVPIASGRQITQSPTYIVKAKIGTPAQTLLLAMDTSNDAAWLPCTACVGCSTSTPFAPAKSTTFRTVRCASPRCKQVPNPTCGGSACAFNFTYGTSSVAANLVQDTVTLATDPVPAYTFGCIQKATGTSVPQQGLLGLGRGPLSLLAQTQKLYQSTFSYCLPSFKTLNFSGSLRLGPVAQPKRIKFTPLLKNPRRSSLYYVNLVAIRVGRRIVDIPPEALAFNPTTGAGTIFDSGTVFTRLVEPAYTAVRNEFRRRVAVGKKLTVTRLGGFDTCYTVPIVAPTITFMFSGMNVTLPPDNILIHSTVGSVTCLAMAAAPDNVNSVLNVIANMQQQNHRVLYDVPNSRLGVARELCT 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01853 436 Pfam Xylanase inhibitor N-terminal 97 257 IPR032861 -
Cca04g01853 436 Gene3D Acid Proteases 258 436 IPR021109 -
Cca04g01853 436 PANTHER ASPARTYL PROTEASES 10 436 IPR001461 GO:0004190|GO:0006508
Cca04g01853 436 SUPERFAMILY Acid proteases 95 435 IPR021109 -
Cca04g01853 436 Gene3D Acid Proteases 74 257 IPR021109 -
Cca04g01853 436 PANTHER ASPARTYL PROTEASE AED3-LIKE 10 436 - -
Cca04g01853 436 ProSiteProfiles Peptidase family A1 domain profile. 97 431 IPR033121 -
Cca04g01853 436 Pfam Xylanase inhibitor C-terminal 280 429 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01853 Cca-Chr4 34719519 34723431 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01853 04 34719519 34723431 Cca04g01853 04 34719519 34723431 ECH