Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01829 ATGGGGAGTAGAACCAGGGTTGTTGGTGTTGAAGATGACAGGGGAGCTGAAAGAGGGATGCCGAGCTTCAATTCTGAGTGGCCCGTGTCCAATGCAGGCTATACAGAGAGGCAGACAATTGATTCCTTTTGTGTTTCTGACTTTGGAGCATTTGATCAGTCATATCGCATAGCAGATGCTGTTGACCTGAGTAGAAACTCAGTTTACAACTCAGTAAAAGTAAGTAGCCAAACAATTTCTCCAGTTTCTGTTCACATTAGCAGCCTTGGTCAGTTGCCTGCTTCACTTGAAAAAAGCCCGTTAACTAATCAAACAGAGCTGCATAGGTTGCGATTACAGAAGGGTCAATCATCAAATTCTGGCACCACAGTAGTTGGTAATACAGATAATCAAGAGGAGTCTGCCATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATGTTGACACTGATGACAAGAATCAGCTGTATGATAGAAATCTATCCATTGTTGCTGTTTCTGACTCTAGTGACAGATCCAAAGATAAATCAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAACCGCGAAGCTGCAAGAAAAAGCCGTTTGAAAAAGAAAGCCTATGTCCAACAGTTGGAAAGTAGTCGTTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGGATCTTCATATCAAGCTCTGGTGATCAAGCACATACATTGAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGGTGGCTGGAAGAGCAGAATCGGCAAACTAATGAGCTGAGAGCAGCTGTAAATTCTCATGCAAGTGACACTGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTTTTAGGCTAAAAGGTGTTGCGGCTAAGGCTGATGTTTTCCATTTGTTGTCTGGTATGTGGAAAACACCTGCTGAGAGGTGTTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTGCTGGTAAGTCAATTGGAACCTCTCACAGAGCAGCAGCTGATGGGCATTACCAACTTGCAGCAATCCTCCCAACAAGCAGAAGATGCATTGTCTCAGGGCATGGAGGCATTGCAACAGTCCCTCGCGGAGACATTGTCCACCGGAGCACCTGCGTCATCTGGTTCATCCGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTTGAAGGGTTCATTCGACAGGCTGACAATCTTCGCCAGCAGACTCTACAACAAATGCACCGTATACTGACAACACGCCAATCAGCTCGGGCACTCCTTGCTATACATGACTATTTTTCGCGACTGCGTGCTCTCAGTTCCCTCTGGCTGGCTCGCCCTAGAGATTGA 1401 0.4625 MGSRTRVVGVEDDRGAERGMPSFNSEWPVSNAGYTERQTIDSFCVSDFGAFDQSYRIADAVDLSRNSVYNSVKVSSQTISPVSVHISSLGQLPASLEKSPLTNQTELHRLRLQKGQSSNSGTTVVGNTDNQEESAMADASPRTDISTDVDTDDKNQLYDRNLSIVAVSDSSDRSKDKSDQKTLRRLAQNREAARKSRLKKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHTLSGNGAMQFDAEYARWLEEQNRQTNELRAAVNSHASDTELRMIVDGILAHYDEIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVSQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPASSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01829 466 MobiDBLite consensus disorder prediction 111 141 - -
Cca04g01829 466 PANTHER TRANSCRIPTION FACTOR TGA9 59 466 - -
Cca04g01829 466 MobiDBLite consensus disorder prediction 167 200 - -
Cca04g01829 466 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Cca04g01829 466 MobiDBLite consensus disorder prediction 1 23 - -
Cca04g01829 466 Pfam Basic region leucine zipper 177 223 IPR004827 GO:0003700|GO:0006355
Cca04g01829 466 MobiDBLite consensus disorder prediction 170 193 - -
Cca04g01829 466 CDD bZIP_HBP1b-like 181 233 - -
Cca04g01829 466 Pfam Seed dormancy control 264 339 IPR025422 GO:0006351|GO:0043565
Cca04g01829 466 ProSiteProfiles DOG1 domain profile. 246 463 IPR025422 GO:0006351|GO:0043565
Cca04g01829 466 SMART brlzneu 177 240 IPR004827 GO:0003700|GO:0006355
Cca04g01829 466 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 59 466 - -
Cca04g01829 466 SUPERFAMILY Leucine zipper domain 181 224 IPR046347 GO:0003700|GO:0006355
Cca04g01829 466 MobiDBLite consensus disorder prediction 111 153 - -
Cca04g01829 466 Gene3D - 180 232 - -
Cca04g01829 466 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Cca04g01829 466 Coils Coil 200 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01829 Cca-Chr4 34073623 34097374 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca04g01829 DOG1 8.8e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01829 04 34073623 34097374 Cca04g01829 04 34073623 34097374 ECH