Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01824 ATGGCTGGTTCAGTTGGAGGGAACGCGAGCTCGAACGCGGGTGTGGAGTGGCACGTGCGTCCTCCAAACCCTAAGAACCCCATCGTCTTCTTCAATGTCACCATCGGTAACATTCCCGCCGGTCGAATCAAGATGGAGCTCTTCGCCGACATTGCGCCCAAAACCGCCGAGAATTTCAGGCAGCTTTGCACTGGGGAGTACAGGAAAGCAGGACTTCCTGTTGGTTACAAGGGTTGTCAATTTCATAGAGTTATTAAGGATTTTATGATTCAGGCCGGTGATTTTGTAAAGGGTGATGGTAGTGGATGTGTTTCCATCTATGGACTCAAGTTTGATGATGAAAACTTCACCGCCAAACACACTGGCCCTGGCCTTCTGTCAATGGCAAATAGCGGGCCAAATACCAATGGTTGTCAGTTCTTTATAACATGCGCAAAATGTGACTGGCTTGACAATAAGCATGTCGTTTTTGGGAGAGTGCTAGGAGATGGTCTTTTGGTTGTCAGGAAGATTGAGAATGTAGCAACAGGACCCAATAACCGACCAAAATTAGCTTGTGTCATTGCTGAGTGTGGTGAAATGTAA 585 0.4735 MAGSVGGNASSNAGVEWHVRPPNPKNPIVFFNVTIGNIPAGRIKMELFADIAPKTAENFRQLCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGLKFDDENFTAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01824 194 PIRSF Peptidylpro_ismrse 13 194 IPR024936 GO:0003755
Cca04g01824 194 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 76 93 IPR020892 GO:0003755|GO:0006457
Cca04g01824 194 Gene3D - 16 194 IPR029000 -
Cca04g01824 194 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 23 194 - -
Cca04g01824 194 CDD cyclophilin_ABH_like 27 192 - -
Cca04g01824 194 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 30 193 IPR002130 GO:0000413|GO:0003755
Cca04g01824 194 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 32 192 IPR002130 GO:0000413|GO:0003755
Cca04g01824 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Cca04g01824 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 81 93 IPR002130 GO:0000413|GO:0003755
Cca04g01824 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 139 IPR002130 GO:0000413|GO:0003755
Cca04g01824 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 151 IPR002130 GO:0000413|GO:0003755
Cca04g01824 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 152 167 IPR002130 GO:0000413|GO:0003755
Cca04g01824 194 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H 23 194 - -
Cca04g01824 194 SUPERFAMILY Cyclophilin-like 17 194 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01824 Cca-Chr4 33933626 33937989 Dispersed/Transposed