Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01812 ATGCACAACAGTTTGCAAATCATGATTATCAAAAATTATGAAAATTGTTTGGTGGGTCTGAAGCTTGCAATTATGGCCTTGTGTCTGCATCTCCTCTCTGGTGTTTTGCTGATTCTTGCCTCAGCAGCAACAGTCACTGTCGAAGGTGCAACGTTGTTCAACAATGATATTAGGAGCAGTTCATCCCTCAACAGGAGCAGTTTCCCACAAGGTTTTATATTTGGAACAGCATCATCTGCTTACCAGTGTGAAGGTGCAGCAAATGTTGGTGGCAGAGGACCAAGTATATGGGATACATACACTCATAATTACCCAGATAAGATACTAGACAAGAGTAATGGAGACGTTTCCAGCGATCAATATCATCGTTATAAGGAAGACGTTGAAATCATGAAGGAAATGAACATGGATGCTTATAGGTTCTCAATCTCTTGGTCCAGAATACTTCCTAAAGGAAAAGTTAGTAGAGGTGTGAACAAAGAAGGAATCAACTATTACAATAACCTCATCAATGAACTATTAGCCAAAGGTCTAAAACCATTTGTGACCATTTTTCATTGGGACCTTCCACAAGCCTTAGAAGACGAATATGGTGGTTTTTTAAGTCCAAACATAGTGAATGATTTTCAAGATTATGCAGAACTTTGTTTTAAGGAATTTGGAGATAGGGTAAAGCATTGGATTACATTAAATGAACCATGGACCTATAGCAAATATGGCTATGCTGATGGCATATCAGCACCTGGAAGATGCTCAACTTGGCAAAACAAAGACTGTGCTGGTGGTGATTCAGCCATTGAGCCCTATATAGTAACTCACAATCAATTACTTGCTCATGCAGCTGCTGTCAATGTCTATAAGACAAAGTATCAGGCATCTCAAAAGGGTATAATAGGGATATCACTATCATGTAACTGGATAGTGCCACTCTATGATACAGAGTTGGATCATCATGCTGCACAAAGAGCCATTGATTTTATGTTTGGATGGTTTATGGAGCCATTGACAATAGGAGATTACCCTAATTCTATGCGATCTTTGGTAGGGAGCCGATTACCAAAATTTTCAACTTATGAGGTTGAACTTGTAAGAGGTTCATATGATTTTATTGGATTAAACTATTATACTTCTTATTATGCTACTGATGCACCTGAATTAAGTGAAGACATGCCTAGCTTCCTCACAGATTCTCGTGTTGTTCTTACAAGTGAACGTAATGGAATACCTATCGGTCCAAAGACTACTTCATTATGGGTGTTTGTTTGTCCGAAAGGAATTCACCAATTGTTGCTCTACGTTAAAACAAAGTATAACAACCCTTTGATCTACATCACGGAAAATGGTTTAGATGAAGTCAATGATCCAAAACAATCTCTTGAGGAAGCTCTTCATGATGTTTCGAGAGTTGATTACTTTTATGATCATCTCTATTATCTTGGAAATGCAATCAAGGATGGTGTAAATGTGAAAGGATATTTTGCATGGTCATTACTTGACAGTTTCGAATGGAATTTAGGCTACATTTCAAGGTTTGGAACAATCTTCGTAGATTACAATAGCCTAAAAAGGCATCCAAAGTTATCAGCTATTTGGTTTAGAAATTTCTTACAACGCCAAATAGTTATATACGATGATTTGTGA 1641 0.3754 MHNSLQIMIIKNYENCLVGLKLAIMALCLHLLSGVLLILASAATVTVEGATLFNNDIRSSSSLNRSSFPQGFIFGTASSAYQCEGAANVGGRGPSIWDTYTHNYPDKILDKSNGDVSSDQYHRYKEDVEIMKEMNMDAYRFSISWSRILPKGKVSRGVNKEGINYYNNLINELLAKGLKPFVTIFHWDLPQALEDEYGGFLSPNIVNDFQDYAELCFKEFGDRVKHWITLNEPWTYSKYGYADGISAPGRCSTWQNKDCAGGDSAIEPYIVTHNQLLAHAAAVNVYKTKYQASQKGIIGISLSCNWIVPLYDTELDHHAAQRAIDFMFGWFMEPLTIGDYPNSMRSLVGSRLPKFSTYEVELVRGSYDFIGLNYYTSYYATDAPELSEDMPSFLTDSRVVLTSERNGIPIGPKTTSLWVFVCPKGIHQLLLYVKTKYNNPLIYITENGLDEVNDPKQSLEEALHDVSRVDYFYDHLYYLGNAIKDGVNVKGYFAWSLLDSFEWNLGYISRFGTIFVDYNSLKRHPKLSAIWFRNFLQRQIVIYDDL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01812 546 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 72 86 IPR033132 -
Cca04g01812 546 PANTHER GLYCOSYL HYDROLASE 30 542 IPR001360 GO:0004553|GO:0005975
Cca04g01812 546 Pfam Glycosyl hydrolase family 1 66 538 IPR001360 GO:0004553|GO:0005975
Cca04g01812 546 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 30 542 - -
Cca04g01812 546 Gene3D Glycosidases 49 538 - -
Cca04g01812 546 PRINTS Glycosyl hydrolase family 1 signature 366 380 IPR001360 GO:0004553|GO:0005975
Cca04g01812 546 PRINTS Glycosyl hydrolase family 1 signature 465 476 IPR001360 GO:0004553|GO:0005975
Cca04g01812 546 PRINTS Glycosyl hydrolase family 1 signature 442 450 IPR001360 GO:0004553|GO:0005975
Cca04g01812 546 PRINTS Glycosyl hydrolase family 1 signature 510 522 IPR001360 GO:0004553|GO:0005975
Cca04g01812 546 PRINTS Glycosyl hydrolase family 1 signature 486 503 IPR001360 GO:0004553|GO:0005975
Cca04g01812 546 SUPERFAMILY (Trans)glycosidases 61 537 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01812 Cca-Chr4 33651390 33664175 Transposed