Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01809 CTCGCCATAAACCCCTCTTGTCCCCTACTTCATTCTCTTCTACTTCGGCGTCGCCTTCTTCGCTTCTCAGAATCAAAACGCCATCGAAACGACGCCGTACCCTCCTTCCTCCCCCTTCTAACCCTAGTTCCTTCTTCTCCGAGAGTGGCGAAGATGGTGATTCCTAAGTTCGACGCGTTGCGAGAGCTGTTCAGGCATCACATAGAGTCCTTTGATTACATGGTCGACGCTGGATTGGAAACCATGCTCAGCCACATCAAGCCCATGGAAGTCTTCGACGATTTCACTTCCACAAAGCTTAGAATTTGGTTGGATAATCCGGTGCTGTATCCACCGCAGAAGGAGCGGATTTCAAGGACAATGCGGGAGGCTTTACTTCCGTTTGAATGTAGACAGGCAAAGACTTCTTATGGAGGGAAGATTACTATAGATGTTTGCTTTCAATATAATGACGGGCCTATTATTAGGGAAAATGTGAATTTTGGGCAGTTTCCCATAATGTTGCAGTCAAAGTTATGCAACTTAAGAGGTGCTAATCCCCAGAAACTTGTGTCCTACAAGGAAGAAGCATCTGAAATGGGCGGTTACTTCATCTTGAATGGCCTTGAGAGAGTTATCCGACTGTTAATTATGCCAAAACGAAATTATCCAATGAGTGTGGTGCGAAATTCATTTAGTGACCGGCGGGAAGGATATACTGATAAAGCAGTGGTAATAAGGTGTGTAAGAGCTGATCAGTCCTCATTATCAATAAAGTTGTATTACCTTCGTAATGGGAGTGCTAGACTTGGTTTCTGGTTAAGGGGACGGGAGTACTTGCTTCCTGTGGGCATTGTTTTGAAGGCCCTCATTGACACAACTGATCGTGAAATTTATGTAAATTTGACAAGCTGCTATAATGAGAAGTATGAAAAGGGAAAGGGTGTTGTTGGGACCCAGCTTGTTGGTGAAAGGGCAAAAATAATCTTAGATGAACTTCGGGATTTGTCTCTTTTCACTCGACTCCAATGTCTAGAATATATTGGAGAGCACTTCCAACCTATTCTGACTAATCTTAAGAATGACAGTTATTCTATTGTGGCTGATGCTGTTTTGAAGGACTGCATATTAGTTCATTTGGATAACAATTTTGACAAATTCAATCTTCTCATTTTCATGTTGCAGAAGCTTTTCTCGCTTATAGATCAGACATCAGTGCCAGACAACCCAGATTCCTTGCAAAATCAAGAGGTTTTACTCCCCGGCCATCTGATTACACTTTATCTCAAGGAAAAACTTGAAGATTGGCTGGAAAAGGGAAGAAGGCTTCTTCTGGACGAGATCAAAAAGAAAAGCAAGAAATTTGATTTCAGTGACATTAGTCAAGTTAAGAAAGTCATGGATAGAAACACACCAAAGCAAGTCAGTACAGCAGTTGAAAATATGTTGAAAACTGGAAGATTGGTTACACAAACGGGTCTGGATCTGCAGCAGAGAGCAGGTTATACAGTTCAGGCTGAAAGGCTAAATTTTTTGCGTTTTCTATCACATTTTCGTGCTGTTCATCGAGGGGCCTCATTTGCTGGACTTCGTACCACAACTGTGCGGAAGCTGTTACCTGAATCTTGGGGTTTTCTTTGCCCGGTGCACACACCTGATGGAGAGCCCTGTGGATTGTTGAATCATATGACTTGCACTAGTAGGATAACGTCATTCTTTGATTCTCGAGGAAATATTAAAGATTATTTTAAAATAAAAATGTCCATCCTAAATATTTTATTGGAGGTTGGGATGACACCATCATTGCCAAAGATATTTCTTCCTGGTCCACCTGAAGCTCTTGTTGTTCTCTTAGATGGTTGTGTTGTTGGTTGTATAGCATCCAGTGAAGTGGAGAAAGTTGTGGCTCACATACGACAATTGAAAGTGTCATCTGCTGCAGTGATTCCTGATGATATGGAAGTAGGATATGTTCCTTTGAGCATGGGTGGAGCCTATCCTGGTCTCTACCTGTCCACATCCCCTTCAAGATTCATTCGGCCAGTAAGAAATATATCAATTCCTTCTAATGGAAGTGAAAACATTGAACTCATTGGGCCATTTGAGCAGGTTTTTATGGAAATTAGATGTCCTGATGGCGGAGATGGTGGAAGAAAAAGTTCATTTCCTGCAACTCATGAAGAAATTCATCCAACAGGAATGCTTAGTGTAGTTGCTAATCTTACCCCATGGTCAGATCATAATCAGAGTCCACGGAATATGTACCAGTGTCAGATGGCAAAGCAAACAATGGCATTCTCTTCACAAACTATTCAACATCGTGCAGATCAAAAGTTATATCATCTTCAGACTCCTCAGACTCCCATTGTACGCACAAGTACATATACTAAATACAACATTGATGAGTTTCCAACAGGCACAAATGCTATAGTTGCAGTTCTGGCATATACAGGATATGATATGGAGGATGCCATGATTCTGAATAAGTCATCAGTTGAACGTGGAATGTTTCATGGACAAATATATCAGACAGAAACTATTGACTTGTCTGAACAAGGTGCAAGGTCAGACCGATCTTCAAGAATATTTAGGAAAAGTAATATAGATAAATCAGCTTGTCCCTCAATTGATTCAGATGGACTTCCACATGTTGGTCAGATGATACGACCAGATGAACCCTATTGTAGCATTTATAATGAGGTAACAAGTTCCGTACACACCTTCAAAAGAAAGGGTTCTGAAGCTGTTTATGTTGACTATGTTGCTGTTGATGTCAAAAGCAAGAAGCATCTTCAGAAGGTTAACATACGCTTTCGACATCCCCGGAACCCTGTTATTGGTGATAAATTTAGCAGCAGACACGGCCAGAAAGGTGTTTGCTCTCAGTTGTGGCCAGATATTGATATGCCATTTTCTGGAAATACTGGGATGCGCCCAGATCTCATTATCAACCCTCATGCATTTCCATCCAGGATGACAATTGCTATGCTTTTGGAATCTGTTGCTGCAAAGGGAGGTAGCTTACGTGGAGAATTTGTTGATGCAACTCCATTTCGAAGTTCAGTGAAGAAAGACAGTGGCAAGTCTGATTCAAATTCAGGTTCACTTGTTGATGATCTTGGTCTTCTGCTAAGAGAAAAGGGATTTAATTATCATGGTTTGGAAGTTCTGTACAGTGGTGTTTATGGAACAGAATTAACATGCGAGATATTTATTGGGCCTGTTTATTATCAGCGGCTGCGTCACATGGTTTCAGACAAATTTCAGGTTCGATCTACTGGTACAATTGACCAGGTGACCCGGCAGCCGATAAAAGGACGGAAGCGCGGTGGGGGAATTCGATTTGGAGAAATGGAACGAGATTCTCTTCTTGCACATGGAGCTGCATATCTTCTGCATGATAGGTTGCACACCTGTTCTGATTATCACATTGCTGATGTATGTTCTCTTTGTGGAAGCATGCTTACAACAACATTCATCCAACATCAAAAGCGGCCAGTGCGGGAGATTGGAGGGCTACCCCCTGGAAGAGCTCCAAAAAAGGTCACCTGTCATGCTTGCCAAACAAGTAAAGGCATGGAGACAGTTGCCATGCCCTATGTGTTTAGATATTTGGCTGCAGAGTTGGCAGCAATGAACATAAAAATGACTCTCAAGCTCAgtgatggttctggtgctgttgctggtgctggagcCTGA 3678 0.4157 LAINPSCPLLHSLLLRRRLLRFSESKRHRNDAVPSFLPLLTLVPSSPRVAKMVIPKFDALRELFRHHIESFDYMVDAGLETMLSHIKPMEVFDDFTSTKLRIWLDNPVLYPPQKERISRTMREALLPFECRQAKTSYGGKITIDVCFQYNDGPIIRENVNFGQFPIMLQSKLCNLRGANPQKLVSYKEEASEMGGYFILNGLERVIRLLIMPKRNYPMSVVRNSFSDRREGYTDKAVVIRCVRADQSSLSIKLYYLRNGSARLGFWLRGREYLLPVGIVLKALIDTTDREIYVNLTSCYNEKYEKGKGVVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPILTNLKNDSYSIVADAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNQEVLLPGHLITLYLKEKLEDWLEKGRRLLLDEIKKKSKKFDFSDISQVKKVMDRNTPKQVSTAVENMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSRGNIKDYFKIKMSILNILLEVGMTPSLPKIFLPGPPEALVVLLDGCVVGCIASSEVEKVVAHIRQLKVSSAAVIPDDMEVGYVPLSMGGAYPGLYLSTSPSRFIRPVRNISIPSNGSENIELIGPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSEQGARSDRSSRIFRKSNIDKSACPSIDSDGLPHVGQMIRPDEPYCSIYNEVTSSVHTFKRKGSEAVYVDYVAVDVKSKKHLQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDIDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFVDATPFRSSVKKDSGKSDSNSGSLVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSLCGSMLTTTFIQHQKRPVREIGGLPPGRAPKKVTCHACQTSKGMETVAMPYVFRYLAAELAAMNIKMTLKLSDGSGAVAGAGA 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01809 1225 Pfam RNA polymerase Rpb2, domain 6 731 1102 IPR007120 GO:0003677|GO:0003899|GO:0006351
Cca04g01809 1225 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 56 1211 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cca04g01809 1225 Gene3D - 732 1087 IPR037033 GO:0003677|GO:0003899|GO:0006351
Cca04g01809 1225 Gene3D - 398 592 - -
Cca04g01809 1225 Gene3D - 56 215 - -
Cca04g01809 1225 Pfam RNA polymerase Rpb2, domain 3 499 562 IPR007645 GO:0003677|GO:0003899|GO:0006351
Cca04g01809 1225 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2 56 1211 - -
Cca04g01809 1225 Pfam RNA polymerase Rpb2, domain 2 233 411 IPR007642 GO:0003677|GO:0003899|GO:0006351
Cca04g01809 1225 Gene3D RNA polymerase alpha subunit dimerisation domain 1089 1215 - -
Cca04g01809 1225 Pfam RNA polymerase I, Rpa2 specific domain 616 673 IPR009674 GO:0003899|GO:0005634|GO:0006351
Cca04g01809 1225 Gene3D RNA polymerase Rpb2, domain 2 216 397 IPR037034 GO:0003677|GO:0003899|GO:0006351
Cca04g01809 1225 ProSitePatterns RNA polymerases beta chain signature. 940 952 IPR007121 GO:0003677|GO:0003899|GO:0006351
Cca04g01809 1225 Pfam RNA polymerase Rpb2, domain 7 1104 1212 IPR007641 GO:0003677|GO:0003899|GO:0006351
Cca04g01809 1225 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 49 1215 - -
Cca04g01809 1225 CDD RNA_pol_B_RPB2 63 1212 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cca04g01809 1225 Pfam RNA polymerase beta subunit 63 458 IPR007644 GO:0003677|GO:0003899|GO:0006351
Cca04g01809 1225 Gene3D - 762 936 IPR014724 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01809 Cca-Chr4 33525881 33550397 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01809 04 33525881 33550397 Cca04g01809 04 33525881 33550397 ECH