Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01805 atggaagagAATGGGCTAGCATTGGAAGAGAAAAGCTGTAAAGAAGCAATGAACCTGTTTGGAGAAACAAAGCATATTCTACTGACAAATTTTTCATCAATGGGGAATGGAACATCTGAAGAAGCAGAGCGGTATTGGTTTGCTTTTATTTTATACTCTGTCAAGAAATTGATCCAGAAAAGTGAGGAGGGTGGGAAGGAAGACACTGAGAACACTGGGCCTACCTTGTGTTGTATACTGAGAGCAGCTAAGCTTAACATTGCAGATTTTTTTAAAGAAATTCCACAGTTTGTTGTAAAGGCTGGTCCAACTTTAAGTAATCTATATGGCCCAGATTGGGAAAACAGGCTTGAGGTGAAGGAGATGCATGCCAATGCTATTCACCTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTCATGGCAACTGACACAATTGTCGAAAAGAACTCGACTGTCAGTGTTCATGCATCTGAATATCATCGATTCGGATGGTTGCTTTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACCAATGGTTTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTGCTCGTTTTCGAAATTTCAACATTCACGACTCCTCGCTGTTTGTGAAGAAGAGTCATAAAGGCGTGGACCTCCTTGCATCACTTTGCAACATATATAACACTTCTGAAGATGAGTTGAAGAAAACAATGGAGAAAGCCAATAATGTAATAGCTGATATATTGAAGAAGCAGCCCTGCTTGGCGTCTGAGTGCGAAACTGAAAACCTAGAGAATATCGATAAAGATGGGTTGACTTATTTTAAAGACCTGATGGAAGAATCATCTCTACCTTCTAGTTTAAATATGTTAGAAAAAGATTATGATGACATGATTCGTGACAAGAGTGAACTGGATGAGAGGTTATTCATTAATGAGGATGACAGTCTATTAGCTTCTGGAAGCTTGTCTGGAGGTTCTGTTTCATCAGGTGGTGTAAAGGTATGTTCAATGGAAAAATTTGGTCTAAAATATTGCTCTATCTTTGCAAATTCAAAGATGGCGGCCACCCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTGCATCGAAGCCCTCGCCAGAGCTGGAAAGATTTTTGACATCTTGTGATAGGGATGTTACTAGTGATGTGGTGCGCAGAGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTTGGAGAACGATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTCATGGACAATATATGGGCAGAACAACGAAGATTGGAAGCACTGAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAGTACTTCATGCAACTAATTTAACCTCTCTACTCACCAATGAAAGATTTCATCGGTGTATGCTTGCATGTTCTGCAGAATTAGTGTTGGCTACTCACAAGACTGTAACCATGTTGTTCCCTGCAGTACTGGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAGTCACTCCCAAGGGAATTAAGGAGACATCTTAATTCGTTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGGCAGTTGCCAGACCTGCCCTTTCTCAAGAGATAAATCGACTTGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCACATTAACTTCTCATGTGGAGGGCTGCCACCGGTGCCTACCTTGCCTAAGCTTGAAAGTTCACCAACTCAGAATGGGGATATCAGATCACCAAAGCGAAATGTGTTAATGGAAAGAAATTCTTTCACATCACCAGTGAAAGATCGGCTTCTTCCCTTTAGCAACCTTAAGTCAAAACTACCCCCACCTCCTTTGCAGTCAGCATTTGCTAGCCCAACAAAGCCGAATCCAGGAGGTGGAGGGGAAACATGTGCGGAAACGGGGATCAACATCTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAAAATGTATACTGTCTTTTCCAGCGGATCCTAAGTCAATGGACATCTCTCTTTTTCAACCGTCATATTGACCAAATTGTCTTGTGTTGTTTCTATGGAATCGCAAAGATTTCACAACTGAACCTAACTTTTAGGGAGATCATATACAACTACAGAAAGCAACCACAATGTAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGACATTGGCACGCCGAAATGGGAGAACAGGACAGGATCATGTTGATATCATTACATTTTACAATGAAATATTCATTCCCTCTGTAAAGCCACTGCTGGTTGAACTTGGCCCTGCTGGAGCAACTGCGAAAAGCGACCGAATACCTGAAGTTATAAATAAAAATGACGCTCAATGTCCGGGTTCTCCTAAAATATCACCTTTCCCATCCCTTCCTGATATGTCTCCAAAAAAAGTATCCGCCACACACAATGTTTATGTCTCTCCATTACGATCATCCAAGATGGATGCTCTAATATCTCACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATACCAGAGCCCTTCAAAAGACCTGACTGCCATCAACAACCGTTTGAATGGCAACCGGAAGGTGAGAGGTCCCCTCAATTTTGATGATGTTGATGTGGGGTTAGTGAGTGACTCCATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCATTGAAATCAGAGCAACCTGACTCTTAA 2898 0.4144 MEENGLALEEKSCKEAMNLFGETKHILLTNFSSMGNGTSEEAERYWFAFILYSVKKLIQKSEEGGKEDTENTGPTLCCILRAAKLNIADFFKEIPQFVVKAGPTLSNLYGPDWENRLEVKEMHANAIHLKILSKYYKRVFGEFFMATDTIVEKNSTVSVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNIHDSSLFVKKSHKGVDLLASLCNIYNTSEDELKKTMEKANNVIADILKKQPCLASECETENLENIDKDGLTYFKDLMEESSLPSSLNMLEKDYDDMIRDKSELDERLFINEDDSLLASGSLSGGSVSSGGVKVCSMEKFGLKYCSIFANSKMAATPVSTAMTTAKWLRTVISPLASKPSPELERFLTSCDRDVTSDVVRRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSQEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPTLPKLESSPTQNGDIRSPKRNVLMERNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILSQWTSLFFNRHIDQIVLCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWTLARRNGRTGQDHVDIITFYNEIFIPSVKPLLVELGPAGATAKSDRIPEVINKNDAQCPGSPKISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPLKSEQPDS 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01805 965 Pfam Retinoblastoma-associated protein A domain 367 568 IPR002720 GO:0005634|GO:0051726
Cca04g01805 965 SUPERFAMILY Cyclin-like 375 570 IPR036915 -
Cca04g01805 965 Gene3D - 164 322 - -
Cca04g01805 965 Gene3D - 370 558 - -
Cca04g01805 965 Pfam Retinoblastoma-associated protein B domain 686 813 IPR002719 GO:0005634|GO:0051726
Cca04g01805 965 PANTHER BNACNNG22930D PROTEIN 3 952 - -
Cca04g01805 965 Coils Coil 298 318 - -
Cca04g01805 965 SMART RB_A_2 367 568 IPR002720 GO:0005634|GO:0051726
Cca04g01805 965 SUPERFAMILY Cyclin-like 684 853 IPR036915 -
Cca04g01805 965 Gene3D - 645 853 - -
Cca04g01805 965 SMART DUF3452_2 55 203 IPR024599 -
Cca04g01805 965 Pfam Domain of unknown function (DUF3452) 70 203 IPR024599 -
Cca04g01805 965 Coils Coil 241 261 - -
Cca04g01805 965 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 3 952 IPR028309 GO:0006357|GO:0051726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Cca04g01805 RB_A 5.2e-65 CL0065