Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01792 ATGAACCAAAAGCTTAATCTTGATATACCTCAGAACAATACATTTCTGTTACCACGAGATATATTGACAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGCATATTTGACGATATAAATCATTTGAAAAACAAACGTATTCGTTCCGTAGCAGATCTATTACAAGATCAATTTGGATTGGCCCTGGTTCGTTTAGAAAATATGGTTAGAGGAACTATATGTGGAGCAATTAGACATAAATTGATACCAACTCCTCAGAATTTGGTGACTTCAACTCCATTAACAACTACTTATGAATCTTTTTTTGGATTACATCCATTATCTCAAGTTTTGGATCAAACCAATCCATTGACCCAAATAGTTCATGGAAGAAAATTGAGTTATTTGGGCCCCGGAGGATTGACAGGGCGAACTGCTAGTTTTCGGATACGAGATATCCACCCTAGTCACTATGGACGCATTTGTCCAATTGACACGTCTGAAGGAATTAATGTTGGACTTATTGGATCTCTAGCAATTCATGTGAGGATTGGTAGTTGGGGGTCTATAGAAAGTCCATTTTATGAAATCTCTGAGAGATCTAAAAGAATACGCATGCTTTATTTATCACCAAGTAGAGATGAATACTATATGGTAGCAACAGGAAATTCTTTGGCACTTAATCGAGATATTCACGAGGAACAGATTGTTCCAGCCCGATACCGTCAAGAATTTCTTACAATTGCATGGGAACAGGTTCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTAATTCCTTTTATCGAACATAATGATGCGAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCGCTTTCTCGGTGCGAAAAATGCATTGTTGGAACTGGATTAGAACGTCAAGTAGCTTTAGATTCAGGGGTTTCCGCTATAGCGGAACACGAGGGAAACATCATTTATACCGATACTGACAAGATTTTTTTATTTGGTAATGGGGATACCCTAAGCATTCCATTAACTATATATCAACGTTCCAACAAAAATACTTGCATGCATCAAAAATCCCAGGTTCAGCGAGGTAAATACATTAAAAAGGGACAAATTTTAGCGGATGGTGCTGCTACAGTTGGCGGCGAACTCGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCATGGGAGGGTTACAATTCTGAAGATGCTGTACTCATTAGTGAACGTCTGATCTATGAAGATATTTATACTTCTTTTCACATACGGAAATATGAAATTCAGACTCATATGACAAGCTATGGTTCTGAAAGAATCACTAATCAAATTCCACACCTAGAAGCCCATTTACTCCGAAATTTAGACAAAAATGGAATTGTGATCCTGGGGTCATGGGTAGAAACGGGCGATATTTTAGTGGGTAAATTAACGCCTCAAATAGCGAAAGAATCCTCGTATTCCCCGGAAGATAGATTATTACGAGCTATACTTGGCATTCAGGTATCCACCTCAAAGGAAACTTGTCTAAAACTACCTATAGGTGGTAGGGGTCGAGTTATTGATGTGAGATGGATCCAAAAAAAGGGAGGTTCCAGTTATAATCCAGAAACGATTCGTATATATATTTTACAGAAACGTGAAATTAAGGTAGGAGATAAAGTGGCCGGGAGACATGGAAATAAAGGTATCGTTTCAAAGATTTTGTCTAGACAAGATATGCCTTATTTGCAAGATGGAAGACCTGTTGATATGGTCTTCAATCCATTAGGGGTACCTTCACGAATGAATGTAGGACAAATATTTGAATGTTCACTCGGGTTAGCAGGAGGTATGCTGGATAGACATTATCGAATAACACCTTTCGATGAGAGATATGAACAAGAAGCTTCAAGAAAACTTGTGTTTTCTGAATTATATGAAGCCAGTAAACAAACATCGAATCCATGGATATTTGAACCCGAGTATCCCGGAAAAAGCAGAATATTTGATGGAAGAACAGGCAATTCTTTTAAACAACCTGCTATAATGGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACGCAACAACCACTTAGAGGAAGGGCCAAACAGGGAGGACAACGGGTAGGCGAAATGGAGGTTTGGGCCTTGGAGGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAAAACTCGCCAAGAAGTACTTGGGACTACGATCATTGGAGGAACAATACCTAAACCTACAGATGCTCCAGAATCTTTTCGATTGCTCGTTCGAGAATTACGATCTTTAGTTATGGAACTGAATCATTTCCTTGTATGCGAGAAGAACTTCCGGATTCATAGGAAGGAAGCTTAA 2418 0.3825 MNQKLNLDIPQNNTFLLPRDILTAADHLIGMKFGMGIFDDINHLKNKRIRSVADLLQDQFGLALVRLENMVRGTICGAIRHKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDQTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHVRIGSWGSIESPFYEISERSKRIRMLYLSPSRDEYYMVATGNSLALNRDIHEEQIVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRCEKCIVGTGLERQVALDSGVSAIAEHEGNIIYTDTDKIFLFGNGDTLSIPLTIYQRSNKNTCMHQKSQVQRGKYIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLIYEDIYTSFHIRKYEIQTHMTSYGSERITNQIPHLEAHLLRNLDKNGIVILGSWVETGDILVGKLTPQIAKESSYSPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIRIYILQKREIKVGDKVAGRHGNKGIVSKILSRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGGMLDRHYRITPFDERYEQEASRKLVFSELYEASKQTSNPWIFEPEYPGKSRIFDGRTGNSFKQPAIMGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKTRQEVLGTTIIGGTIPKPTDAPESFRLLVRELRSLVMELNHFLVCEKNFRIHRKEA 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01792 805 Gene3D - 420 542 IPR014724 GO:0003899
Cca04g01792 805 ProSitePatterns RNA polymerases beta chain signature. 552 564 IPR007121 GO:0003677|GO:0003899|GO:0006351
Cca04g01792 805 Gene3D - 35 311 - -
Cca04g01792 805 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 297 796 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cca04g01792 805 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA 1 169 - -
Cca04g01792 805 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA 191 297 - -
Cca04g01792 805 Pfam RNA polymerase Rpb2, domain 7 716 791 IPR007641 GO:0003677|GO:0003899|GO:0006351
Cca04g01792 805 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 1 169 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cca04g01792 805 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 191 297 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cca04g01792 805 Pfam RNA polymerase Rpb2, domain 3 111 179 IPR007645 GO:0003677|GO:0003899|GO:0006351
Cca04g01792 805 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA 297 796 - -
Cca04g01792 805 Pfam RNA polymerase Rpb2, domain 6 263 714 IPR007120 GO:0003677|GO:0003899|GO:0006351
Cca04g01792 805 Gene3D - 313 385 - -
Cca04g01792 805 Gene3D - 543 700 IPR037033 GO:0003677|GO:0003899|GO:0006351
Cca04g01792 805 Pfam RNA polymerase Rpb2, domain 2 1 50 IPR007642 GO:0003677|GO:0003899|GO:0006351
Cca04g01792 805 Gene3D RNA polymerase alpha subunit dimerisation domain 702 759 - -
Cca04g01792 805 CDD RNA_pol_B_RPB2 19 791 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cca04g01792 805 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 2 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01792 Cca-Chr4 32709573 32713030 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01792 04 32709573 32713030 Cca04g01792 04 32709573 32713030 ECH