Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01782 ATGGCATCTTCAAATTCACCATGTGCAGCATGCAAGTTCTTGCGTCGCAAATGCCAACCCGAGTGTGCATTTGCACCCTACTTCCCCCCTGACCAGCCTCAAAAGTTCGCAAACGTTCATAGAATTTTTGGGGCAAGCAATGTCACAAAGCTTCTCAACGACTTGCACCCTCACCAACGTGAAGACGCCGTCAATTCCCTCGCTTATGAAGCTGAAATGAGGCTCCGTGACCCTGTCTATGGTTGTGTAGGAGTCATATCCCTCCTACAACACCAACTTCGCCAGCTTCAAATGGACCTCTATTGTGCCAAATCCGAGCTCTCTAGGTACCAAAACTTGAGCATCACCACCAACCATGGCCTCATAGCGTCCGAGTCGGCGGCCACGGCCTGCCACCATCACCAGAACACGTCTACTGGTGGTGGCTTCGGCCGTGaccaccactaccactatcatcaccaccaATTCTTCCCTAGGGAACAACAAGTGGTGAGAGGCTTTGATGGAGGGAGCAACTATGATGCCAGTCTCTTGGCCATGAACATATCCGCCAGCTTAGGGCAACTCAACCAGCTTCAGCATCAGAGTGCTGCTGGCGGGGGCGATGACCGCCACACTTCCAACCGCACCTAG 633 0.5071 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSITTNHGLIASESAATACHHHQNTSTGGGFGRDHHYHYHHHQFFPREQQVVRGFDGGSNYDASLLAMNISASLGQLNQLQHQSAAGGGDDRHTSNRT 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01782 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 168 - -
Cca04g01782 210 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cca04g01782 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 168 - -
Cca04g01782 210 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01782 Cca-Chr4 32283238 32284779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01782 2 208 AS2 family AT1G65620 64.593 8.67e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca04g01782 LOB 2.8e-42 No_clan