Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01780 ATGGGGGCAACAGAGGAGACTAAACAATATCCTATGAATAACAAAGTTGTTTTTTCCGAAAATCCAATTATTATAAATGTTAGTGATGGTACAAAAAATATAGTTAATAATAATGTTAGTCGTGATGCAAAAAATTTAGTCAATATTAAAGTTAGTGATGATGAAAAAAACCCTATAGTAAATGGTAGAGAAGGTGTTGAAGAAATCTATGCTAAAAATAAGGAAGATTGCATTCCAAGTGAAGCAAAAGATATGCTGAAATCATTAGCAAGTGAATGGGAGAATGTAGTTGATGTCAATGCATGGCAAGTGATCCAACTTAAGGGGGCAATGACAAATGAAGTGTTTCAAATAAAATGGCAAACAATAGATGGAGATATCTCACGAAAGGTTCTAGTGAGAATCTATGGACAGGGTACTAGCATTTTCTTTAATAGAGATGTTGAGGTTGCAACATTTGAATTCATGTCAAAGAATGGACAAGGACCTCGTTTGCTAGGAATGTTTGCAAATGGGCGTATTGAAGAATTCATTAATGCAAGGACATTATCAGCACTAGATCTACGAGATCCATCTATTTCTTCTCTAATAGCAACCAAAATGAAGGAGTTTCATGATCTTGATATGCCTGGTCCAAAGAATGTGAAGCTTTGGGATAATTTAAGGAATTGGCTTAATGAAGCCAAGCGCGTGTGTTCTCCTGAAGAAATCAAAGCATTTCATTTGGACACATTGGACCAGGAAATATCTACTTTGGAAAATGAATTATCAAAGACTCAACAACGCATAGGATTTTGCCATAACGATTTGCAATACGGCAACATAATGCTCGATGAAGAGTCCAATTTTGTGACCCTAATAGATTATGAGTATGGAAGTTATAATCCTGTGGCATATGATATAGCAAACCATTTCAACGAAATGGCCGCCAACTATCATACAGAAACCCCACATATTCTCGACTTCAGTAAATATCCTGATTTAGAGGAGCGCCGAAGATTTGGGCATGCATATTTGAGTTGTTTGTCAGGTGAACAACCTAATAATAGTGTTGTGGATCAACTACTTGATGATGTTGAAAAGTATGCACTGGTGAATCATCTATTGTGGGGCGTGTGGGGAATAATTTCGGAACATGTAAATAAAATTGATTTTGACTATAAGGAGTATGCAAAACAAAGATTTCAAGAGTATTGGTCAAGGAAAACATCTCTTTTGAGCTCTCAAGGATCTTTCCATGATAATGTGACTAAAGGGGAGCAAGCACCAACATCAACCACCAACAGAAAACCAACTAAGAGAAACAGTATCTCCAGGAAGTTCAAGAAAGTTTTTGGAATTGGTTTATTTAGATTAAAACACTAG 1365 0.3582 MGATEETKQYPMNNKVVFSENPIIINVSDGTKNIVNNNVSRDAKNLVNIKVSDDEKNPIVNGREGVEEIYAKNKEDCIPSEAKDMLKSLASEWENVVDVNAWQVIQLKGAMTNEVFQIKWQTIDGDISRKVLVRIYGQGTSIFFNRDVEVATFEFMSKNGQGPRLLGMFANGRIEEFINARTLSALDLRDPSISSLIATKMKEFHDLDMPGPKNVKLWDNLRNWLNEAKRVCSPEEIKAFHLDTLDQEISTLENELSKTQQRIGFCHNDLQYGNIMLDEESNFVTLIDYEYGSYNPVAYDIANHFNEMAANYHTETPHILDFSKYPDLEERRRFGHAYLSCLSGEQPNNSVVDQLLDDVEKYALVNHLLWGVWGIISEHVNKIDFDYKEYAKQRFQEYWSRKTSLLSSQGSFHDNVTKGEQAPTSTTNRKPTKRNSISRKFKKVFGIGLFRLKH 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01780 454 Coils Coil 242 262 - -
Cca04g01780 454 Gene3D Phosphorylase Kinase; domain 1 89 177 - -
Cca04g01780 454 SUPERFAMILY Protein kinase-like (PK-like) 73 402 IPR011009 -
Cca04g01780 454 Gene3D - 137 399 - -
Cca04g01780 454 PANTHER CHOLINE KINASE 2-RELATED 70 417 - -
Cca04g01780 454 MobiDBLite consensus disorder prediction 410 432 - -
Cca04g01780 454 Pfam Choline/ethanolamine kinase 129 329 - -
Cca04g01780 454 PANTHER CHOLINE/ETHANOALAMINE KINASE 70 417 - -
Cca04g01780 454 MobiDBLite consensus disorder prediction 410 434 - -
Cca04g01780 454 CDD ETNK_euk 103 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01780 Cca-Chr4 32217858 32226903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01780 65 408 Acyl Lipid Metabolism Gene Families AT1G74320 63.953 4.92e-167 472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01780 04 32217858 32226903 Cca04g01780 04 32217858 32226903 ECH
Cca10g01842 10 34505608 34513690 Cca04g01780 04 32217858 32226903 PCT