Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01775 ATGGCCACTGAAAAGCTTAGAGGTTGTGCAAAATTCTTTGAGAGCTCTAAACCCTACTTGGCCATGATCTCTTTACAGTTTGGCTATGCTGGCATGAACATTATCACTAAGGTTTCCCTCAACCAAGGCATGAGCCACTATGTCCTCGTGGTTTATCGCCACGCTATTGCCACCCTTTCCATCGCTCCTTTTGCCTTTATTTTTGAAAGGAAAGGTCAACCGAAGATAACATTCAGAATTTTCATGCAAATTTTTATCCTAGCACTTCTCGGGCCTGTCATTGATCAAAATTTCTACTATGCTGGGTTGAAGCTCACATCCCCAACCTTCTCATGTGCATTGAGCAACATGCTTCCAGCCATGACTTTTGTGATGGCATTCTTTTGCCGGATGGAGAAGATAAACTTAAAGAAGGTGAGATGCATAGCAAAGATAGTGGGAACATTAGTGACAGCTGCAGGAGCTATGTTGATGACCTTATACAGAGGTCCTATAGTGGAGATGGTATGGGCCAAGCATGCTAATCCACACAGTAAAACCAATGGAACAAGCACCACAGGATCATTGGACAAAGATTGGTTCTTAGGGTGCATCTTTCTTATGATTGCCACCCTTGCTTGGGCTTCCCTCTTTGTTTTACAAGCCAAAGCTATACAGACGTACAAGAATCATCAGCTAAGCCTAACTTCACTTGTGTGCTTTATAGGCACAATTCAAGCTATTGCTGTTACTTTTGTAGCTGAACACAATCCTTCAGTATGGAGAATTGGCTTGGATATGAATTTACTTGCTGCTGCCTATGCTGGGATTGTGACCTCAAGTATATCATACTTTGTACAAGGACTGGTGATTAAGAAGAAAGGGCCTGTCTTTGCAACTGCCTTTAGCCCTTTAATGATGATCATTGTGGCTGTCATGGGCTCCTTTATCCTTGCGGAACAAATTTATCTTGGAGGTGTGATAGGTGCCATCTTGATTGTTATAGGGTTATACTCAGTTCTGTGGGGAAAACACAAAGAACAAATGGAGAGCAAAGTGGCAGATGAAATTCCCTTGCCTGTAAAGGATGCTCAAGTTGGTGTAATTGAAGGGCCAATGATTAATGCTACAGATAATTTCACTGAAGAAAAAAGAGATACCAACAACAACCTCTCTTCGGTGCTAATAACTATGCCTAATCCAGATGCTCCCTCGAAAGCTAACCAAGATGCAAAGTCTTAA 1221 0.421 MATEKLRGCAKFFESSKPYLAMISLQFGYAGMNIITKVSLNQGMSHYVLVVYRHAIATLSIAPFAFIFERKGQPKITFRIFMQIFILALLGPVIDQNFYYAGLKLTSPTFSCALSNMLPAMTFVMAFFCRMEKINLKKVRCIAKIVGTLVTAAGAMLMTLYRGPIVEMVWAKHANPHSKTNGTSTTGSLDKDWFLGCIFLMIATLAWASLFVLQAKAIQTYKNHQLSLTSLVCFIGTIQAIAVTFVAEHNPSVWRIGLDMNLLAAAYAGIVTSSISYFVQGLVIKKKGPVFATAFSPLMMIIVAVMGSFILAEQIYLGGVIGAILIVIGLYSVLWGKHKEQMESKVADEIPLPVKDAQVGVIEGPMINATDNFTEEKRDTNNNLSSVLITMPNPDAPSKANQDAKS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01775 406 PANTHER WAT1-RELATED PROTEIN 12 370 - -
Cca04g01775 406 PANTHER WAT1-RELATED PROTEIN 12 370 IPR030184 GO:0016021|GO:0022857
Cca04g01775 406 Pfam EamA-like transporter family 195 334 IPR000620 GO:0016020|GO:0016021
Cca04g01775 406 Pfam EamA-like transporter family 18 146 IPR000620 GO:0016020|GO:0016021
Cca04g01775 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 158 - -
Cca04g01775 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01775 Cca-Chr4 31966137 31969734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01775 1 392 Nodulin-like Gene Family AT5G07050 64.444 0.0 519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01775 04 31966137 31969734 Cca04g01775 04 31966137 31969734 ECH
Cca10g01853 10 34935685 34938899 Cca04g01775 04 31966137 31969734 PCT