Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01773 ATGAGAGCGCCCTCTTCAACATCAACACTTTACTCcttcctcttcctcttccttttcctaacccttccatcatcctcAGGGGACGACTGCTCCCAATACCACCACGCGCCCATGGCCACGCTCGGAGGCCTTCGCGACTCCCATCCCTCTCAGAACGCCTTAGAAACCGAACCCCTCGCGCGTTTCGCCGTCGATCAACATAACATGAAACAGAATTCGCTCCTAGAGTTTTCTAGGGTGGTGAGGGCACGGGAACAGGTTGTTGCAGGTACCCTGCATTACCTTACCCTTGAGGCTATTGAAGCTGGTGAGAAGAAGATTTATGAAGCCAAGGTGTGGGTGAAACCCTGGATGAACTTCAAAGAACTCCAAGAGTTCAAGCCTGCTGGTGATTCATCAGCATTTACCTCTGCTGATCTTGGTGTCAAAAAGGATGGCCACAAGCCAGGATTGCAATCTGTGCCAACACATGACCCTCAAGTTCAGGATGCAGCAAATCATGCAATCAAGACAATCCAGCAAAGGTCTAATTCATTAGTACCCTATGAACTTCATGAGGTTGCAGATGCTAAGGCTGAGGTCATTGATGATTTTGCCAAGTTTAATCTGCTTCTCAAGGTCAAGCGGGGAGAGAAGGAAGAGAAGTTCAAGGTAGAGGTACACAAGAATAACCAAGGTGGCTTCCATCTAAATCAAATGGAACAAGATCATTCCTAA 717 0.4519 MRAPSSTSTLYSFLFLFLFLTLPSSSGDDCSQYHHAPMATLGGLRDSHPSQNALETEPLARFAVDQHNMKQNSLLEFSRVVRAREQVVAGTLHYLTLEAIEAGEKKIYEAKVWVKPWMNFKELQEFKPAGDSSAFTSADLGVKKDGHKPGLQSVPTHDPQVQDAANHAIKTIQQRSNSLVPYELHEVADAKAEVIDDFAKFNLLLKVKRGEKEEKFKVEVHKNNQGGFHLNQMEQDHS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01773 238 Gene3D - 141 234 - -
Cca04g01773 238 ProSitePatterns Cysteine proteases inhibitors signature. 85 98 IPR018073 -
Cca04g01773 238 Gene3D - 38 138 - -
Cca04g01773 238 CDD CY 42 128 IPR000010 GO:0004869
Cca04g01773 238 PANTHER CYSTEINE PROTEINASE INHIBITOR 6 38 235 - -
Cca04g01773 238 SUPERFAMILY Cystatin/monellin 147 232 IPR046350 -
Cca04g01773 238 SUPERFAMILY Cystatin/monellin 37 132 IPR046350 -
Cca04g01773 238 PANTHER CYSTATIN FAMILY MEMBER 38 235 IPR027214 GO:0004869
Cca04g01773 238 Pfam Aspartic acid proteinase inhibitor 58 128 IPR000010 GO:0004869
Cca04g01773 238 SMART CY_4 39 129 IPR000010 GO:0004869
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01773 Cca-Chr4 31855022 31857935 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01773 04 31855022 31857935 Cca04g01773 04 31855022 31857935 ECH