Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01772 ATGGAAGTATCAGTTGAGACTGCTGAGGGAAATGCTCGAATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCTGTGCCTGTTTTAGTTTCTAAAGCACTAGAACTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCATTGCATTTAAAACACTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTTAGCAGGGTTCCTGACTACAGCCATGGTCATGGCCATGCTGAGGCTGGTCCTGATGATCGGGCCATTTCAAAAAGAAGGAAAGCTGTTGGTGATGATGGTAATGACAGTGATGAAGAGGCTAAGAGGAGCAAGATGCATGAGATGAGCCACACTGGCAGTACTGGTAGGGGAAgaggtcgaggcagaggaagaggtcgtggccgagggcgaCCACCTCTACAAAGAGATACATATCATCAGGATGCTGAATCTGAGCCATGCACTTCAGTTCAGCTGGGAAACCATCAAAATACAAACACAAATGTGGCAGTATCTGGTGGTTCTGAGCCAAAGGAGATATCAAAGGAGAATATTGCAGTTGCTGCTGTAAGCTCTGATTCTCTGCGGAATATTGATCTGAACGCCAGTACAAATGAAAGCGATGATAAAAAGGCTAGCACAACAGCTGATGCCTCATTGCCTGAACCTGATGCCCCGTTACCTGAACCTCCAACAGAGAGCAAGCATGAAGAAATTCCGGGGTGGTCCCTTTCTGATGTGGACAAGATGGCCATTGATTCAATGAACCTTGCACAACTAAGTAGGCCACTAgaagaggatgaggaagattatgacgaggaggaGGGGTGA 882 0.4082 MEVSVETAEGNARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYSHGHGHAEAGPDDRAISKRRKAVGDDGNDSDEEAKRSKMHEMSHTGSTGRGRGRGRGRGRGRGRPPLQRDTYHQDAESEPCTSVQLGNHQNTNTNVAVSGGSEPKEISKENIAVAAVSSDSLRNIDLNASTNESDDKKASTTADASLPEPDAPLPEPPTESKHEEIPGWSLSDVDKMAIDSMNLAQLSRPLEEDEEDYDEEEG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01772 293 Gene3D Histone, subunit A 10 86 IPR009072 GO:0046982
Cca04g01772 293 SUPERFAMILY Histone-fold 18 87 IPR009072 GO:0046982
Cca04g01772 293 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 291 - -
Cca04g01772 293 MobiDBLite consensus disorder prediction 167 191 - -
Cca04g01772 293 MobiDBLite consensus disorder prediction 90 137 - -
Cca04g01772 293 MobiDBLite consensus disorder prediction 246 260 - -
Cca04g01772 293 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 12 71 IPR003958 -
Cca04g01772 293 PANTHER HISTONE SUPERFAMILY PROTEIN 5 291 - -
Cca04g01772 293 MobiDBLite consensus disorder prediction 209 293 - -
Cca04g01772 293 MobiDBLite consensus disorder prediction 90 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01772 Cca-Chr4 31849817 31853639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01772 1 279 CCAAT-HAP5 Transcription Factor Family AT3G12480 44.710 6.73e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca04g01772 CBFD_NFYB_HMF 5.7e-17 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01772 04 31849817 31853639 Cca04g01772 04 31849817 31853639 ECH