Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01769 ATGAAGGGAAAACTACTAAATCTGAGATCAATATATTCCTTTATTTTTCTTCTATTTCTAAGCTTCAAGCCACTTAATACAAAGGCACAATCGCCAAACTATGTTGGAGATGACTGCGATTACAACACCCCAAAATCTCTCAGCACTGCATACCAAACCAACCTTAAAAGCGTCCTCTCATGGCTATCAACAGATGCAGCCACAAGCAAAGGTTGGAACTACAAGAGCTTCGGTAACAACACCCCTGGAGATCCTGCTGCGTATGGCCTCTATGATTGCCGTGGTGATGTTGCTGGATACTTTTGCCAATTCTGTGTCTATACTGCTTCTAGAGAAGTTCTTCAGCGCTGCCCCAATAGAGTATCTGCTTTTATATGGTATGATTTCTGCATCCTAAGATACTCTAATGAGAACTTCATTGGGAATGTCACAGTATACCCAACATGGCATGCTTTTGGGACAAAAAATGTCTCTAGTACACAAGAGATTCAGAAAGGTGAGGATTTTATGAGAAGTTTGATCAGAAAAGCAACTGTGGAGACCAACCAGTTGTACTATATGGATGGTTTCAATTTGAGTTCCACTCAGAGAAGGTATGGCTTGGTGCAGTGCAGCAGAGATCTCACAAATGATGGGTGCAGACAGTGTTTGGAGACCATGTTAGCACTAGTTCCCAAATGCTGTGAACATAATTTGGGGTGGTTCGTTGGGTCTGCAAGTTGTCTCATAAAGTATGATGATTATATTTTCTACTTATTTCACACTCAACCATCTTCAGTTTCCGTGCCTGATCCCCAAATAGCTAAACAAATGGGTGCTGGTAAAACAAGAATATTGATCATTGGCTTAAGTGTGCCAGGGGCAGTAGCTTTACTATGCTTCAGTGTCTATTGTTTATGGTTCaggaatagaattagaagaggaagtggaagagGTGGGCGAATACCTGATACTATTCGTCCATCATCACATCACAATGTTGAAACTGAGGAAACACTGAATCCAGACCTGCTTACTATCCCATTAGTCACAATTCTTAAGAGTACTGATGACTTTTCAGACGAATCCAAGTTAGGGGAAGGTGGATTTGGCCCCGTTTACAAGGGAACTCTACCGGATGGAAGACAAATTGCGGTCAAAAGACTCTCACAAGCTTCAGGTCAAGGGTCTGAACAGTTCAAAAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTCGTAAGACTTTTGGCATGCTGCTTGGAGAAAAATGAAAAGATACTTGTATATGAGTATTTGTCGAATGCAAGTCTCGACTTTCATCTGTTTGATGATAGGAAGAAAAGGCAACTAGATTGGAATATTAGGTTAAATATTATCAATGGCATAGCAAAAGGTCTTTTATACCTTCACGAGGACTCTCGACTCAAAGTTATTCATAGAGATCTCAAAGCTAGTAATGTTTTGTTAGATGATGAGAAGAATCCAAAAATATCAGATTTTGGACTACTTATACCTAATATTTCTTTAAATAATAGGATTCATATAAATGCAATTTTAAGCACTTT 1553 0.3857 MKGKLLNLRSIYSFIFLLFLSFKPLNTKAQSPNYVGDDCDYNTPKSLSTAYQTNLKSVLSWLSTDAATSKGWNYKSFGNNTPGDPAAYGLYDCRGDVAGYFCQFCVYTASREVLQRCPNRVSAFIWYDFCILRYSNENFIGNVTVYPTWHAFGTKNVSSTQEIQKGEDFMRSLIRKATVETNQLYYMDGFNLSSTQRRYGLVQCSRDLTNDGCRQCLETMLALVPKCCEHNLGWFVGSASCLIKYDDYIFYLFHTQPSSVSVPDPQIAKQMGAGKTRILIIGLSVPGAVALLCFSVYCLWFRNRIRRGSGRGGRIPDTIRPSSHHNVETEETLNPDLLTIPLVTILKSTDDFSDESKLGEGGFGPVYKGTLPDGRQIAVKRLSQASGQGSEQFKNEVMFIAKLQHRNLVRLLACCLEKNEKILVYEYLSNASLDFHLFDDRKKRQLDWNIRLNIINGIAKGLLYLHEDSRLKVIHRDLKASNVLLDDEKNPKISDFGLLIPNISLNNRIHINAILST 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01769 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Cca04g01769 517 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 498 - -
Cca04g01769 517 Pfam Salt stress response/antifungal 46 136 IPR002902 -
Cca04g01769 517 Pfam Salt stress response/antifungal 167 248 IPR002902 -
Cca04g01769 517 SMART serkin_6 352 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01769 517 Gene3D - 148 250 IPR038408 -
Cca04g01769 517 Gene3D - 34 139 IPR038408 -
Cca04g01769 517 SUPERFAMILY Protein kinase-like (PK-like) 327 501 IPR011009 -
Cca04g01769 517 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
Cca04g01769 517 ProSiteProfiles Protein kinase domain profile. 352 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01769 517 ProSiteProfiles Gnk2-homologous domain profile. 33 139 IPR002902 -
Cca04g01769 517 Gene3D Phosphorylase Kinase; domain 1 317 427 - -
Cca04g01769 517 Gene3D Transferase(Phosphotransferase) domain 1 428 508 - -
Cca04g01769 517 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 20 498 - -
Cca04g01769 517 Pfam Protein tyrosine and serine/threonine kinase 355 499 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01769 Cca-Chr4 31748452 31775016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01769 15 498 Receptor kinase-like Gene Family AT4G05200 40.323 2.03e-115 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01769 PK_Tyr_Ser-Thr 4.6e-31 CL0016