Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01766 ATGGGAACACAACTAAACATGAGATCAATATCCTTTACTTTCTGGTTATTGCTGAGTTTCAGAGCACTCTTTACAGAGGCACAAGTACCAAATTTATTGGGAAGTAATTGCCAAAACACCAGCCAACAACAACAACCTCTCAGCAGTGCATACCAAACTAATCTTGAGAGAATCCTTACATGGGTATCCTCTGATGCATACAAAGGCAAAGTTTATAACTACAGAAGCATAGGCATCACCTCCTCTGTGTATGGCCTCTATGATTGCCGTGGTGACGTGGTTGGATACTTTTGTCAATTTTGTGTTTCTAATGCTGCCAGAGAAGCCCCTCGGCTCTGCCCCAATAGTGTATCTGCTATGGTGTGGTATGATTATTGCATTCTAAGGTACTCAAATGAGAACTTCTTTGGGAAAGTTCTCACAAACCCAATATGGTATGTTCTTGGAACCAAAAACATATTCAACAAGACAGAGATTCAGAAAGGTAAGGATTTTGTGACAAGTTTGATAAGAAAAGCAACTAAGGATACCAACCAGTTGTACTATATGGATGGCTTCAGTATGAGTTCCACTCAAAGAAGGTATGGCTTTGTGCATTGTAGCAGAGATCTCACAAGTGAAAGATGCAAACAGTGTTTGGAGGCGATATTAGCTCAAGTTCCCAATTGTTGTGAACAAAAATTAGGATGGTTTATTTGGACCGGAAGTTGTATGATAAAGTATGATAATCATATGTTTTACCTTCTTAGCAACCAAGCATCTTATGTTTCTGTGCCTAATCCGCAAACAGCTGAAAATGGGGGTAATAAGAGGATAAAAAGCTTGATCATTAGCTTCGGTGTGATGGGGTCAATAATTCTATTACTATGTTTTGTATATTGCTTCCGGTACATGAGCAGAGTCAGAAAAGATGGGCTTTGTCTTTCTTCATTTCGTAAAATTCAAACTGAGGAAACTTGGAAAACAGACCTGCCTATAATCCCATTAATCACAATTCTGCAAAGTACTGATAACTTTTCAGAAGCATCTAAATTAGGGGAAGGAGGATTTGGCCCCGTTTACAAGGGAATTCTACCAGATGGAAGACAAGTTGCAATCAAAAGGCTTTCAAATTTTTCCAGTCAAGGCTCAGAAGAGTTCAATAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTTGTAAACCTTTTGGCATGTTGCTTGGAGGAAAATGAAAAGATACTTGTATACGAGTATTTGGCGAATAAAAGTCTTGACTTCCACTTGTTTGAGGCACAAGTACCAAATTTATTGGGAAGTAATTGCCAAAACACCAGCCAACAACAACAACCTCTCAGCAGTGCATACCAAACTAATCTTGAGAGAATCCTTACATGGGTATCCTCTGATGCATACAAAGGCAAAGTTTATAACTACAGAAGCATAGGCATCACCTCCTCTGTGTATGGCCTCTATGATTGCCGTGGTGACGTGGTTGGATACTTTTGTCAATTTTGTGTTTCTAATGCTGCCAGAGAAGCCCCTCGGCTCTGCCCCAATAGTGTATCTGCTATGGTGTGGTATGATTATTGCATTCTAAGGTACTCAAATGAGAACTTCTTTGGGAAAGTTCTCACAAACCCAATATGGTATGTTCTTGGAACCAAAAACATATTCAACAAGACAGAGATTCAGAaagtaggcgccacctgcacaacaattggggcattcacctctggcacctccgagctcggcaccacctag 1749 0.3774 MGTQLNMRSISFTFWLLLSFRALFTEAQVPNLLGSNCQNTSQQQQPLSSAYQTNLERILTWVSSDAYKGKVYNYRSIGITSSVYGLYDCRGDVVGYFCQFCVSNAAREAPRLCPNSVSAMVWYDYCILRYSNENFFGKVLTNPIWYVLGTKNIFNKTEIQKGKDFVTSLIRKATKDTNQLYYMDGFSMSSTQRRYGFVHCSRDLTSERCKQCLEAILAQVPNCCEQKLGWFIWTGSCMIKYDNHMFYLLSNQASYVSVPNPQTAENGGNKRIKSLIISFGVMGSIILLLCFVYCFRYMSRVRKDGLCLSSFRKIQTEETWKTDLPIIPLITILQSTDNFSEASKLGEGGFGPVYKGILPDGRQVAIKRLSNFSSQGSEEFNNEVMFIAKLQHRNLVNLLACCLEENEKILVYEYLANKSLDFHLFEAQVPNLLGSNCQNTSQQQQPLSSAYQTNLERILTWVSSDAYKGKVYNYRSIGITSSVYGLYDCRGDVVGYFCQFCVSNAAREAPRLCPNSVSAMVWYDYCILRYSNENFFGKVLTNPIWYVLGTKNIFNKTEIQKVGATCTTIGAFTSGTSELGTT 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01766 582 Gene3D - 144 246 IPR038408 -
Cca04g01766 582 Gene3D - 431 535 IPR038408 -
Cca04g01766 582 Gene3D - 31 135 IPR038408 -
Cca04g01766 582 ProSiteProfiles Gnk2-homologous domain profile. 431 535 IPR002902 -
Cca04g01766 582 ProSiteProfiles Gnk2-homologous domain profile. 31 135 IPR002902 -
Cca04g01766 582 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
Cca04g01766 582 Pfam Salt stress response/antifungal 37 132 IPR002902 -
Cca04g01766 582 Pfam Salt stress response/antifungal 437 532 IPR002902 -
Cca04g01766 582 Pfam Salt stress response/antifungal 164 243 IPR002902 -
Cca04g01766 582 ProSiteProfiles Protein kinase domain profile. 339 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01766 582 SUPERFAMILY Protein kinase-like (PK-like) 316 431 IPR011009 -
Cca04g01766 582 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 427 562 - -
Cca04g01766 582 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 19 426 - -
Cca04g01766 582 Pfam Protein tyrosine and serine/threonine kinase 342 427 IPR001245 GO:0004672|GO:0006468
Cca04g01766 582 Gene3D Phosphorylase Kinase; domain 1 306 414 - -
Cca04g01766 582 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 427 562 - -
Cca04g01766 582 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01766 Cca-Chr4 31620816 31626349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01766 430 553 Receptor kinase-like Gene Family AT4G05200 34.375 1.18e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01766 Stress-antifung 1.1e-15 No_clan