Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01765 ATGTCGCGGAAACAACTAAACGTGAGATCAATATGCTTTGGTTTCTTGTTTTTAATGAGTTTCAGTTTGATACCACTCAGTACAAAGGCTCAAATGCCCATTTACCTTGAAAGTTATTGTCAAAACACGACCAACCAAGTTCTGAGCAGTGCATACCAAACAAACCTTAACAACGTCCTCTCATGGCTAACCTTAGATGCAGCCACAAGCAAAGGTTACAACTACATAGAAAGCAACACCACGGTGCCTGTGTATGGCACCTATAATTGCCGTGGTGACGTGGTTGGCGTCTTTTGTGAGTTTTGTGTTTCTAATGCTGTCAGAGAAGTCCCCCATCGCTGCCCCAATGCGTTCGCTGCTATTGTTTGGTATGATTTCTGCATTCTAAGGTACTCTAATGAGAGCTTCTATGGGAAAGTTCTGACACACCCAATGTGGAATGGTACTGGAGATAAAAACATATCCAACGTGGCAGAGATTCAGAAAGGTGGGGATTTTGTGAGAAGTGTGATCAGAAAAGCATATAAGGAGACCAACTTTTACTATATTGATGATTTCAATTTGAGCTCCACTCAGAGAAGATATAGCCTGGCACAGTGCAGTAGAGATCTCACGAATGAAGGGTGCAGACAGTGTTTGGAGGCCATATTCGCCATAGTTCCCCAATGTTGTGAACTGAAATTAGAATGGTTTGTTATGACTGGGACTTGTGTGTTAAGGTATGATGATCGTATGTTCTACCTCAACAACCAAACAGCTTCAGTTTCTTTGCCTAATAGGCAAACAGCTAAACATGGGGTAAATAAGAGGTCAAAAATCTTGATCATTAGCTTAAGTGTGATGGCAGCAATAACTCTACTATGCTTCTATGTATATTGCTTCTGGTACAGGCGTAGAGTTACAAAAGATGGGTTGATACCTCAAACCATTCGTCTAAAATCACATCAAAATGTTCAAACGGAGGATACACTGAATGCAGACTTGTCTAGAATCCCATTAATCACAATTCTACAGAGTACTGACAACTTTTCAGAAGCATCTAAGCTAGGGGAAGGTGGATTTGGCCCCGTTTACAAGGGAATTCTACCAGATGGAACACAAATTGCAGTGAAAAGGCTCTCAGAATTTTCTGGTCAAGGCTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCTAAATTGCAACATCGAAACCTTGTAAGACTCTTGGCATGCTGCTTGGAGGAAAATGAAAAGATACTTATATATGAGTATTTGCCGAACGCAAGTCTTGATTTCCATCTCTTTGACGATGAAAAAAGAAAGGAACTCAATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTATTTTATACCTTCACCAAGACTCTCGACTCAAAGTAATTCATAGAGATCTCAAAGCTAGCAATGTCCTACTAGACCAAGAGATGAATCCCAAAATATCAGATTTTGGATTGGCAAAAGCATTTGAAATTGGACAGAACCAGGGCAATACAAAACGAGTAATGGGCACTTATGGATACATGGCTCCGGAGTATGTTATGGAAGGATTATTTTCAGTGAAATCCGATGTTTTCAGTTTTGGAGTCCTTGTTTTAGAAATCATTTGTGGGAGAAAGAATTCTGGATTCCATCTGTCAGGAGTAGGACATGGTCAAACTCTTACTTTATATGCTTGGAGAATATGGTGTGCAGGAAAATGTTTGGAATTGATGGATCCAACACTGGAAAAAACATTCACAGGAAGTGAAGTTGAGAGGTGCATACACATTGGTTTATTGTGTGTTCAAGAAGATGCAACAGATAGACCAACCATGTCCGATGTTGTGGTAATGCTGGCAAGTGAGACAATGGCCATTCCAAAACCCAAGCATCCAGCATTTTCAGTTGGAAAAATGACCTCAGAGGAAGAAACTACATCAAAAAGCTCCAAGAACCTTTCCCTTAATGATGTAACTCTCTCTATTACTTTACCTAGGTAA 1992 0.3991 MSRKQLNVRSICFGFLFLMSFSLIPLSTKAQMPIYLESYCQNTTNQVLSSAYQTNLNNVLSWLTLDAATSKGYNYIESNTTVPVYGTYNCRGDVVGVFCEFCVSNAVREVPHRCPNAFAAIVWYDFCILRYSNESFYGKVLTHPMWNGTGDKNISNVAEIQKGGDFVRSVIRKAYKETNFYYIDDFNLSSTQRRYSLAQCSRDLTNEGCRQCLEAIFAIVPQCCELKLEWFVMTGTCVLRYDDRMFYLNNQTASVSLPNRQTAKHGVNKRSKILIISLSVMAAITLLCFYVYCFWYRRRVTKDGLIPQTIRLKSHQNVQTEDTLNADLSRIPLITILQSTDNFSEASKLGEGGFGPVYKGILPDGTQIAVKRLSEFSGQGSEEFNNEVMFIAKLQHRNLVRLLACCLEENEKILIYEYLPNASLDFHLFDDEKRKELNWKLRLSIINGIARGILYLHQDSRLKVIHRDLKASNVLLDQEMNPKISDFGLAKAFEIGQNQGNTKRVMGTYGYMAPEYVMEGLFSVKSDVFSFGVLVLEIICGRKNSGFHLSGVGHGQTLTLYAWRIWCAGKCLELMDPTLEKTFTGSEVERCIHIGLLCVQEDATDRPTMSDVVVMLASETMAIPKPKHPAFSVGKMTSEEETTSKSSKNLSLNDVTLSITLPR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01765 663 SUPERFAMILY Protein kinase-like (PK-like) 320 616 IPR011009 -
Cca04g01765 663 ProSiteProfiles Gnk2-homologous domain profile. 34 136 IPR002902 -
Cca04g01765 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Cca04g01765 663 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
Cca04g01765 663 MobiDBLite consensus disorder prediction 628 649 - -
Cca04g01765 663 Gene3D Phosphorylase Kinase; domain 1 306 418 - -
Cca04g01765 663 SMART serkin_6 343 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01765 663 ProSiteProfiles Protein kinase domain profile. 343 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01765 663 Gene3D Transferase(Phosphotransferase) domain 1 419 627 - -
Cca04g01765 663 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 21 659 - -
Cca04g01765 663 CDD STKc_IRAK 349 616 - -
Cca04g01765 663 Gene3D - 34 136 IPR038408 -
Cca04g01765 663 Gene3D - 148 246 IPR038408 -
Cca04g01765 663 Pfam Domain of unknown function (DUF3403) 618 663 IPR021820 GO:0004674
Cca04g01765 663 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 659 - -
Cca04g01765 663 Pfam Salt stress response/antifungal 188 243 IPR002902 -
Cca04g01765 663 Pfam Salt stress response/antifungal 40 133 IPR002902 -
Cca04g01765 663 Pfam Protein tyrosine and serine/threonine kinase 347 614 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01765 Cca-Chr4 31568899 31572702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01765 15 663 Receptor kinase-like Gene Family AT4G05200 42.206 9.64e-173 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01765 PK_Tyr_Ser-Thr 2.6e-46 CL0016