Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01758 ATGAGACGATTGAAGAATGACATTAATGAAGATGAGGTGCTTCCCAATGATCAGACTGGGGCACAGCTGAATGGGGCACAGCTGAATGATGAGGGTTCTGAAGGAAGTGCTGGCGTTGTTCTGAAGAAAGGACCATGGACATCAACTGAAGATGATATTTTGGTGGATTATGTCAAGAAGCATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCACACAGGGCTATTACGTTGTGGAAAAAGTTGTCGGCTGCGATGGGCTAATCATCTTAGGCCAAATTTGAAGAAAGGTGCATTTACTGCAGAAGAGGAGCGGTTGATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGTACAGATAATGAGATAAAAAACTACTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGATTGCCACTTTATCCACCAGAAGTGTGTTTACAAGCTTTACAAGAGAGTCAACATAGCCAAAGCTCTGGTGGACTTAATGGGGACAATAAAATGCATCCTGATTTCTTGCAGAAAAACAGTTATGAGATACAAGATTCTATATTTGACAGTCTGAAGGATAATCAGGGAATCATACCTTATATGCCTGAGCTTTCTGATATTTCTGTCTATGGCAATATGCTGAAAGGTTTTGATTCTTCTCAGTATTGTAGTTTTGTGCCACCAACATCACCTAAGCATAAGCGTCTTAGAGAGTCAACAATACCATTTATTGATTCCAGTGATATGAGCAGAAATGGTTTATATCCATTTGATCAAATTCGGGATAATAATTCTGATGAGATAGCACAATCATTTGGAATGCCAGCACCCCTTGATCCTGGTCCCTCCTCGCACAGCTCAATTTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTATGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTGATTTAGGTAGCTGGGGTACATCTCCCCCACCTTCTTTGCTCGAGTCAGTTGATGATTTCATTCAGTCTCCTACACCAATTAGTACTCTGGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTTCTGGATGCTTTACTTTATCAAGCAAGGACTCTGAGCAGTTCAAAGAACCATTGTTCTGACAAGAGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGCAGACAGCTCTGCTTTGAATGTGCACGAGACAGAATGGGAAGACTATGCTGATCCGGTATCCCCATTTGGTGCAACTTCAATATTGAACGAGTGCCCTGCTCTTAATGCAAATGCAAATTCATTGGACAAACAGCTACCCGTTCAGACCTTTAATGGCGACATTCTGAAATTAGAGTCTGTTGACGAGGTTTGGACTCCTAATGGTGAAAATCAAACACTGTCCCTGTTGAATATTACACGTCCAGACTTCTTGCTTGCTTCAGATTGGCCTGACCTGAGTTCTGGGCATGGCAAGAACCTAGCCTTCACAATGGATGCTACGACGACCCTTGGCCTTGGAGATGATTTAGCCACTGATCATAAGCATGTGACTGCTGGAACTTCCAAGTCAAGTCAAATGTGGGGGTTTGGTTCTTGTGCAACTGCAATGATTGGTTAA 1653 0.435 MRRLKNDINEDEVLPNDQTGAQLNGAQLNDEGSEGSAGVVLKKGPWTSTEDDILVDYVKKHGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQALQESQHSQSSGGLNGDNKMHPDFLQKNSYEIQDSIFDSLKDNQGIIPYMPELSDISVYGNMLKGFDSSQYCSFVPPTSPKHKRLRESTIPFIDSSDMSRNGLYPFDQIRDNNSDEIAQSFGMPAPLDPGPSSHSSICYSHSLSNGNSSTSKPTYEAVKLELPSLQYPELDLGSWGTSPPPSLLESVDDFIQSPTPISTLESDCSSPQNSGLLDALLYQARTLSSSKNHCSDKSSNSSTATPGDRADSSALNVHETEWEDYADPVSPFGATSILNECPALNANANSLDKQLPVQTFNGDILKLESVDEVWTPNGENQTLSLLNITRPDFLLASDWPDLSSGHGKNLAFTMDATTTLGLGDDLATDHKHVTAGTSKSSQMWGFGSCATAMIG 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01758 550 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Cca04g01758 550 Pfam Myb-like DNA-binding domain 96 139 IPR001005 -
Cca04g01758 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 90 IPR017930 -
Cca04g01758 550 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Cca04g01758 550 MobiDBLite consensus disorder prediction 385 405 - -
Cca04g01758 550 ProSiteProfiles Myb-like domain profile. 41 90 IPR001005 -
Cca04g01758 550 MobiDBLite consensus disorder prediction 1 43 - -
Cca04g01758 550 Gene3D - 98 144 - -
Cca04g01758 550 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 546 - -
Cca04g01758 550 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 546 - -
Cca04g01758 550 MobiDBLite consensus disorder prediction 13 31 - -
Cca04g01758 550 MobiDBLite consensus disorder prediction 385 409 - -
Cca04g01758 550 SUPERFAMILY Homeodomain-like 42 137 IPR009057 -
Cca04g01758 550 SMART sant 95 143 IPR001005 -
Cca04g01758 550 SMART sant 42 92 IPR001005 -
Cca04g01758 550 Gene3D - 42 95 - -
Cca04g01758 550 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Cca04g01758 550 CDD SANT 45 90 IPR001005 -
Cca04g01758 550 CDD SANT 98 139 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01758 Cca-Chr4 31380991 31384571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01758 29 545 MYB Transcription Factor Family AT5G06100 44.528 2.78e-124 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca04g01758 Myb_DNA-binding 9.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01878 10 35635785 35639396 Cca04g01758 04 31380991 31384571 PCT