Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01751 ATGTCAACCCCACCAATGTCGACCTTTCTTTTCATCTTCTCCCTCTCCCTCCTTGTGCCACTACTCCTAGCTCAAGCTCCATCACCATCACATGCCCCTCCTCCTCTTAAACAATCACCATCTCCAACACATGTTCCACCTTCTCCTCCTCTTAAACAATCATCATCTCCAACACATGCTCCACCTCCTCCACCTCCTAAACAATCACCATCTCCAACACATGCCCCTTCTCCTCCACCTCCTAAACACTCACCATCTCCAACACATGCTCCTCCTCCTCCTCTTAAACAATCACCATCTCCAACACATGCCCCTTCTCCTACTTCATCACCATCATCAACACATGCCCCTCCTCCTCCACCTCTTAAAGCTCCTACTCCTCCTCCTCCACCTTCATCACCCTCTTCAGCATGCAAGTCCACACTATATCCAAAACTATGCCGCTCCATTCTCTCCTCCATCCGTTCCTCCCCCTCAGACCCCTACAACATGGGCAAATTCTCCATCAAACAAAGCCTCAAACAAGCCAAGAAACTGGCCAAAGTGTTCGAGGACTTCCTCAGAAAACACAAATCCTCTTCCCTCAACAACGCGGCAATCGCAGCCTTGGAGGACTGCAGCGAGCTCAACCAGCTGAACGTGAACTACCTGGACTCGGTTTCGCAAGAGCTAAAGTCCGCAAACTCCTCCAACGCAGAGTTTGTGGAGAAGATCGAAACCTATCTGAGTGCTGTGGCCACCAACCACTACACTTGCTATGATGGGTTGGTGCTGGTCAAGAGCGACATTGCCAATGCACTCGCGGTGCCTCTCAGCAATGCCACCAAACTCTACAGTGTGTCGCTTGGCTTGGTCACGCAGGCTCTCAAGAAAAACCTCAAGAAGCATAAGACACGCAAACATGGCCTGCCCACACAGGATTACAGGGTCAGGCAGCCACTTAAGAACCTCATTAAGCTTCTTCGCACAAAGTACAGTTGCACATCATCCAATTGCACTAGAAGTGAAAGGATTCTTAAAGAAAGTGAGAACAAAGGGATTCTACTAAAAGAGTTTGCGATTGTGAGCCTTGATGGCAGAGCCAATTTCACTTCCATTGGAGAGGCTATTGCCTCTGCACCCGATTTTTTAAGGCCAGAAGATGGCTATTTTCTCATCTATGTTAGAGAAGGAAACTATGAGGAATATGTTGTTGTTCCCATTCAAAAGAAGAATATCTTGCTTATTGGTGATGGTATCAACAAGACTTGCATCACTGGAAACCACAGTGTGGCAGATGGTTGGACCACTTACAATTCTTCAACCTTTGCTGTTTCCGGAGAAAGATTCGTTGCAGTGGATGTTACATTCAGAAACACAGCAGGCCCTCAGAAGCACCAAGCAGTAGCTGTGAGGAACAATGCAGACCTCTCCACATTCTACCGTTGCAGCTTTGAAGGATACCAAGACACTCTCTATGTTCACTCCCTCAGGCAATTCTACAGGGAATGTGACATTTATGGCACTGTGGATTTCATTTTTGGCAATGCTGCTGTGGTGTTCCAGAGCTGCAACATCTATGCCAGAAAGCCACTTCCAAAGCAGAATAATGCTATCACAGCACAAGGGAGAACTGACCCCAATCAGAACACTGGAATTTCAATACAGAATTGCAGGATTGATGCTGCTCCTGACTTGGCTGCAGACTTGGATTCAACAAAGAATTACTTGGGCAGGCCATGGAAAGTGTATTCAAGGACTGTGTTCATGCAATCATATATTGGAGAACTGATTCAGTCTGCTGGATGGTTAGAGTGGAATGGCACAGATGGATTAGACACCCTCTTTTATGGTGAGTTTGATAACCATGGACCTGGGGCTGATACCAGCAAGAGGGTACAATGGAGTGGTTACAATCTGTTGACTGCTACTCAAGCTTGGAACTTCACGGTGCTTAATTTTACTTTGGGGAATACATGGCTTCCGGATACAGATATACCCTATGTTGAAGGACTTTAG 1998 0.4695 MSTPPMSTFLFIFSLSLLVPLLLAQAPSPSHAPPPLKQSPSPTHVPPSPPLKQSSSPTHAPPPPPPKQSPSPTHAPSPPPPKHSPSPTHAPPPPLKQSPSPTHAPSPTSSPSSTHAPPPPPLKAPTPPPPPSSPSSACKSTLYPKLCRSILSSIRSSPSDPYNMGKFSIKQSLKQAKKLAKVFEDFLRKHKSSSLNNAAIAALEDCSELNQLNVNYLDSVSQELKSANSSNAEFVEKIETYLSAVATNHYTCYDGLVLVKSDIANALAVPLSNATKLYSVSLGLVTQALKKNLKKHKTRKHGLPTQDYRVRQPLKNLIKLLRTKYSCTSSNCTRSERILKESENKGILLKEFAIVSLDGRANFTSIGEAIASAPDFLRPEDGYFLIYVREGNYEEYVVVPIQKKNILLIGDGINKTCITGNHSVADGWTTYNSSTFAVSGERFVAVDVTFRNTAGPQKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNIYARKPLPKQNNAITAQGRTDPNQNTGISIQNCRIDAAPDLAADLDSTKNYLGRPWKVYSRTVFMQSYIGELIQSAGWLEWNGTDGLDTLFYGEFDNHGPGADTSKRVQWSGYNLLTATQAWNFTVLNFTLGNTWLPDTDIPYVEGL 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01751 665 SMART PMEI_2 129 284 IPR006501 GO:0004857
Cca04g01751 665 SUPERFAMILY Pectin lyase-like 352 664 IPR011050 -
Cca04g01751 665 PRINTS Proline rich extensin signature 29 50 - -
Cca04g01751 665 PRINTS Proline rich extensin signature 50 66 - -
Cca04g01751 665 PRINTS Proline rich extensin signature 68 85 - -
Cca04g01751 665 PRINTS Proline rich extensin signature 87 112 - -
Cca04g01751 665 Gene3D - 352 665 IPR012334 -
Cca04g01751 665 MobiDBLite consensus disorder prediction 26 139 - -
Cca04g01751 665 PANTHER PECTINESTERASE 128 664 - -
Cca04g01751 665 PANTHER PECTINESTERASE 128 664 - -
Cca04g01751 665 TIGRFAM PME_inhib: pectinesterase inhibitor domain 136 287 IPR006501 GO:0004857
Cca04g01751 665 ProSitePatterns Pectinesterase signature 2. 499 508 IPR033131 -
Cca04g01751 665 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 136 287 IPR035513 -
Cca04g01751 665 CDD PMEI-like_3 138 286 - -
Cca04g01751 665 Gene3D Invertase/pectin methylesterase inhibitor family protein 133 288 IPR035513 -
Cca04g01751 665 Pfam Pectinesterase 353 650 IPR000070 GO:0030599|GO:0042545
Cca04g01751 665 Pfam Plant invertase/pectin methylesterase inhibitor 135 283 IPR006501 GO:0004857
Cca04g01751 665 MobiDBLite consensus disorder prediction 27 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01751 Cca-Chr4 31024803 31030779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01751 137 665 Carbohydrate Esterase AT3G10720 63.178 0.0 696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01894 10 36056783 36062729 Cca04g01751 04 31024803 31030779 PCT