Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01750 ATGTCTTTCTTGAACTCTTATGGCAAAGTTGAGGAATCCGACCAAGCCATGTTCGAAGTTCGCCGCAAGACACGAAAGCGAATCACCATCATAGCGTTGTCCACAGTAGTCCTCGTTGGTGTCGTGTGCGGTGCTGTGTTTGGAACCGTTGCTCacaacaacaacaacaatgcacatgacaacaacaacaacaacgacTCAAACGATGGAACCAGTGCTCCTTTTCTTTCGAACTCGGTGAAGGCTGTTTGTGACGTGACACTTTACACGGACGCGTGTTATAGCAGCCTCGGTCCTCTGGTGCACGAGGGTCAGGTTCGACCTGAGAAGCTGTTCTTGTTATCTGTTGAAGTGGCATTGGCTGAGGCTTCGAGGGTTGTTAAGTATTTCTCTGATGATGATCATGAGAAGGGGTTTTTGAGTGGGTTGAATGTTGATAACAGGACCAAGGAGGGTTTTAGAAACTGCGTGGATCTTTTGGGTCTTGCGGTTGATCATCTGAATGGCTCCTTGGCTTCTGGGGGGAAGTCTTCATTGCTTGATGTGATTGAGGATCTTAGAACATGGTTGAGTGCTGCAGGTACTTACCATCAAACCTGCATTGATGGCTTTGAAAAGGCAGAAGAATCACTGAAAAGCAGTGTCATAAGCAATCTAAAAAATTCTACAGAGTTCACCAGTAACAGTCTTGCCATCGTTACATGGCTTAACAAGGTTGCAAGCAGTGTGAACTTGAGGCGCTTGTTGAGTACTTCACCACATAAGATGGAAGAACCAAAGTGGCTTCATTCTAAAGACCGGAAGCTGCTTCAAACAAACGATTTGAAGAGGAAAGCTGACATTGTTGTAGCAAAAGATGGAAGTGGAAAATTTAAGACAATTACTGAAGCACTTAAACATGTCCCTGAGAAAAGTGACAAGAGGACAGTGATCTATGTGAAGAAGGGGGTTTATAATGAAAATGTGAGGGTGGAGAAGACCAAATGGAATGTCATGATCGTTGGTGATGGTATGAGCGCCACTATTGTATCCGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACTGCAACATTCGCTGTTTTTGGGAGGAATTTCATTGCTAGGGACATGGGATTTCGGAATACAGCTGGTCCACAGAAGCACCAAGCAGTGGCACTGATGACAAGTGCTGATCAAGCAATTTACTACAGGTGTCACATTGATGCATTTCAGGACACTCTCTATGCTCTTTCCAACCGCCAATTCTACAGAGAATGCGATATTTATGGCACAGTTGATTTCATTTTTGGCAACTCAGCAGTTGTTCTCCAAAACTGCAACATTTTTCCAAGGTTGCCTATGCAGGGTCAGCAGAACACCATAACAGCACAGGGCAAAACTGACCCCAACATGAACACCGGAATTTCAATTCAAAATTGTAACATTGCACCCTTTGGGAACCTAAGTTCTGTTAAAACATACCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTGTTTATGCAATCCACATTGGGCAGTTTCATTCACCCAAATGGATGGTTACCTTGGGTAGGGGACTCAGCACCAGATACCATATTTTATGCAGAATTTCAGAATGTTGGACCAGGTTCTTCAACAAAGAATAGGGTGAAGTGGAAGGGTGTGAAAACCATTTCAACTAAACAGGCTAGCGCGTTTACTGTCAAGGCTTTTCTTTCAGGGGACAGATGGATTCCAGCTTCGGGTGCCCCCTTTAAATCTTCTATGTGA 1761 0.4333 MSFLNSYGKVEESDQAMFEVRRKTRKRITIIALSTVVLVGVVCGAVFGTVAHNNNNNAHDNNNNNDSNDGTSAPFLSNSVKAVCDVTLYTDACYSSLGPLVHEGQVRPEKLFLLSVEVALAEASRVVKYFSDDDHEKGFLSGLNVDNRTKEGFRNCVDLLGLAVDHLNGSLASGGKSSLLDVIEDLRTWLSAAGTYHQTCIDGFEKAEESLKSSVISNLKNSTEFTSNSLAIVTWLNKVASSVNLRRLLSTSPHKMEEPKWLHSKDRKLLQTNDLKRKADIVVAKDGSGKFKTITEALKHVPEKSDKRTVIYVKKGVYNENVRVEKTKWNVMIVGDGMSATIVSGSLNFVDGTPTFSTATFAVFGRNFIARDMGFRNTAGPQKHQAVALMTSADQAIYYRCHIDAFQDTLYALSNRQFYRECDIYGTVDFIFGNSAVVLQNCNIFPRLPMQGQQNTITAQGKTDPNMNTGISIQNCNIAPFGNLSSVKTYLGRPWKNYSTTVFMQSTLGSFIHPNGWLPWVGDSAPDTIFYAEFQNVGPGSSTKNRVKWKGVKTISTKQASAFTVKAFLSGDRWIPASGAPFKSSM 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01750 586 SMART PMEI_2 75 232 IPR006501 GO:0004857
Cca04g01750 586 PANTHER PECTINESTERASE 5 584 - -
Cca04g01750 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 236 IPR035513 -
Cca04g01750 586 TIGRFAM PME_inhib: pectinesterase inhibitor domain 77 236 IPR006501 GO:0004857
Cca04g01750 586 PANTHER PECTINESTERASE 5 584 - -
Cca04g01750 586 SUPERFAMILY Pectin lyase-like 278 582 IPR011050 -
Cca04g01750 586 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
Cca04g01750 586 ProSitePatterns Pectinesterase signature 1. 305 324 IPR018040 -
Cca04g01750 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 238 IPR035513 -
Cca04g01750 586 Gene3D - 275 586 IPR012334 -
Cca04g01750 586 Pfam Pectinesterase 280 572 IPR000070 GO:0030599|GO:0042545
Cca04g01750 586 CDD PMEI-like_3 82 238 - -
Cca04g01750 586 Pfam Plant invertase/pectin methylesterase inhibitor 79 232 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01750 Cca-Chr4 31020606 31024395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01750 7 586 Carbohydrate Esterase AT3G10710 57.461 0.0 680
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01893 10 36053175 36056352 Cca04g01750 04 31020606 31024395 PCT