Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01743 ATGGATTGTGGTGCTGTGTGCTGCTCTGCCTATATCATCTCTCTTTCCATTCCTGTATTTCATGGTTCTGCATACATGCTTGGAAGATGTTTTACATCTGTATTATGGGGAATTATAGCTGATCGCTATGGAAGGAAGCCTGTTTTAATTATAGGGATTATTTCAGTAATCATTTTCAATACACTATTTGGCCTCAGCACAAATTTTTGGATGGCTGTTATCATGAGATTTCTTCTGGGAGTTTTTAATGGTTTGCTTGGACCAGTGAAGGCCTATGCCGCTGAACTTTTTCGAGAAGAACACCAAGCTATAGGACTCTCAACTGTCAGTGCAGCTTGGGGCATAGGTTTAATCATAGGCCCAGCATTGGGAGGTTATTTGGCTCAGCCTGTAGAGAAGTACCCTCATGTATTTCCAAAGGATTCCTTTTTGGATAAGTTTCCATACTTCTTGCCCAGCTTTATAATAACAGTATTTGCAGTTGTAGTAGCTATTGTCTGTATCTGGATTCCGGAAACACTTCACAACCACAATTGTAGTGATGAATCCATAGACAATGCCGAAGCTTTAGAAAATGGAAGCAGTGGGGCAGCTAAAGACAAGATAATCCGAAAGAATGAAAACCTCCTCCTGAACTGGCCCTTAATGTCATCTATCATTGCTTATTGTGTTTTTTCACTTCATGATATTGCTTATCAAGAGGTTTTCTCCTTATGGGCTGTCAGTCCTCAAAGGCTAGGGGGTTTGAACTTTACAACGGATGATGTTGGTAATGTTCTTGCAATATCAGGTCTTGCACTTATAATTTACCAACTTACCACATACCCATCTGTGGAAAAAGATTTTGGACCTATTGGTATTGCCCGTATTTCAGGGATGTTATCCATACCTCTTTTGCAAAGCTACCCCTTCATAGCATTGTTGTCAGGCTTAGCATTATACATAGTGATAAGTATTGCTTCAATTCTGAAGAATGTTTTGTCTACAACTATTATAACTGGTTTGTTCCTTTTGCAAAACCGAGCAGTGGAACAACACCAAAGGGGGGCAGCTAATGGCATTTCTATGACAGGCATGTCTCTGTTCAAAGCTATTGGCCCTGCTACAGGTGGTGTCATATTAACTTGGTCACAAAAGCGGTTGGATGCTTCATTCCTCCCAGGCACACATATGGTCTTCTCTATCCTGAATATTGTTGAAGGAATTGGAATACTAATGCTTTTCAAACCATTCCTTGCTGAAAAGAAGAAAACTCACTCAGATCAGTTACATTGA 1275 0.4016 MDCGAVCCSAYIISLSIPVFHGSAYMLGRCFTSVLWGIIADRYGRKPVLIIGIISVIIFNTLFGLSTNFWMAVIMRFLLGVFNGLLGPVKAYAAELFREEHQAIGLSTVSAAWGIGLIIGPALGGYLAQPVEKYPHVFPKDSFLDKFPYFLPSFIITVFAVVVAIVCIWIPETLHNHNCSDESIDNAEALENGSSGAAKDKIIRKNENLLLNWPLMSSIIAYCVFSLHDIAYQEVFSLWAVSPQRLGGLNFTTDDVGNVLAISGLALIIYQLTTYPSVEKDFGPIGIARISGMLSIPLLQSYPFIALLSGLALYIVISIASILKNVLSTTIITGLFLLQNRAVEQHQRGAANGISMTGMSLFKAIGPATGGVILTWSQKRLDASFLPGTHMVFSILNIVEGIGILMLFKPFLAEKKKTHSDQLH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01743 424 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 20 422 - -
Cca04g01743 424 CDD MFS_SLC46_TetA_like 22 409 - -
Cca04g01743 424 Pfam Major Facilitator Superfamily 22 321 IPR011701 GO:0022857|GO:0055085
Cca04g01743 424 PANTHER MAJOR FACILITATOR SUPERFAMILY-RELATED 20 422 - -
Cca04g01743 424 SUPERFAMILY MFS general substrate transporter 22 417 IPR036259 -
Cca04g01743 424 Gene3D MFS general substrate transporter like domains 4 399 IPR036259 -
Cca04g01743 424 PRINTS Tetracycline resistance protein signature 49 73 IPR001958 GO:0022857
Cca04g01743 424 PRINTS Tetracycline resistance protein signature 106 128 IPR001958 GO:0022857
Cca04g01743 424 PRINTS Tetracycline resistance protein signature 280 300 IPR001958 GO:0022857
Cca04g01743 424 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 412 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01743 Cca-Chr4 30509967 30516758 Wgd