Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01741 ATGGAAGAAGGGTTGCGGCAAAACTCAGTTCCTCCTAGTTCAGGTTTTGTTGATAAAACTAAGGTTGTAGAGGCAAAACCCCTGCGTAGTTTAGCACCTGTGTTGCCAAAATCTCTTCAATCTTCTCTCTCTGGCCGGTACCCTTGTGTGTTTCCTCCGTTTGTTGTGGTTGAGGAAGCTCAAGAGTCTCAACCATCATCACCTGCTCCCATTCCAGCTCCAATAAAGTCCTATAGGAACCCATTagtagaagaagaagaagaagaagaaACCCCACATGGAGCCAATGGAGATACTTCTTCACCGATGGAGGTTCTTGATGGTTATAGCCAAAAGCGTGTGCCTATGAACAGCTGCAAATCATCCCAAAAGAGGGGTAGGAAAACTCAGGAGTCACAGTTTGATTCGAGTTCCTTGGTTGGTGGTGGTATTGGTGTGGCCCAAAGGGATGATGGTGACCGTGAAACGGTTAATCTAGTGCTCATGACTTATGATTCTCTTCGAAGAAGGCTGTGTCAACTTGAAGATGCTAAGGAGTTGAACACAACCATGGCAATCAAGCGGGCGGATTTGAGAGCAAGCAATGCCTTGTCGGCTAAGGCGTTTCGAACAAACATGAGGAAGAGAGTAGGAGCAGTGCCTGGGGTTGAGATTGGGGACATTTTCTTTTTACGGATGGAAATGGTTCTTGTGGGTTTACATATCCAGTCAATGGGAGGAATTGACTACATGACCACCAAGGATGAAACAGTGGCTTTAAGCATTGTTTCTTCCGGAGTATATGATGATGAAACGGAGGATAATGATGTTTTAGTTTATAGTGGTCAGGGTGAGAACTTCAACAAGAAAGATAAGCATGTGATTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTAGATAGAAGTTCACGCCAACAGAATGAAGTTAGAGTCATCCGGGGCCTAAGAGATGCTGTGAACAGAAGTGCAAAAATCTATGTCTATGATGGTCTGTATAAAATCCAAGATTCTTGGATAGAAAGAGGGAAATCCGGTGGTGGTGTATTTAAGTATAAGTTTGTTAGATTGCCTGGACAACCTAGTGCTATTGCTGTTTGGAAATCGGTTCAGAAGTGGAAGATGGACTCGTCTTCAAGGACTGGCCTTATTCTTGCAGACCTCTCCAGAGGAGATGAGAGTGTTCCTGTGTCACTTGTCAATGAAGTTGATAACGAGAACTGCCCCGTTTTCAATTATTTCAATTCTCTCAAACATCAGAAACCATTCAGTTTAGGGCAATCTTCATATGGCTGCAACTGTTACAAATCATGTGTCCCTGGTGATTTGAGCTGCTCTTGCATTCAAAGAAATGAAGGCGACTTTCCATACACTGCAAATGCTGTTCTAGTGAGTAGGACACAATTGGTTCATGAGTGTGGCCCAATGTGTAAGTGTTTCCCTAACTGCAAGAATCGAGTATCCCAGACTGGTTTGAAGCACCAAATGGAAGTGTTCAAAACAAAAGATAGAGGGTGGGGACTTCGATCACTGGATCCTATTCGAGCTGGTACTTTTATTTGTGAGTATGCTGGAGAAGTTATTGACAGGGCCAAGGTAAATCCATATGGGGGATACAATGATGACTATATTTTTGATACAAGCCGTATTTATGATCCATTCAAATGGAACTATGAGCCTAGTTTATTGGAAGAAATAAGCTCAAATGTCTCTAGTGAGGATTATGCTATCCCGTATCCTCTAATTATCAGTTCCAAGAATTTTGGAAATGTGGCAAGATTTATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCAGTCTTGTATGCGGAAAACAATCAATCCTTTCTTCACATTGCATTTTTTGCCTTAAGACACATTCCTCCAATGGCAGAGTTAACATATGATTATGGATGTTCTGGTCATGCTGAGGGTGGCAACGCACCCAAAGGGAGAAAGAAATGCCTGTGTGGATCATCAAAATGCCGTGGTTCTTTTGGTTGA 2004 0.4232 MEEGLRQNSVPPSSGFVDKTKVVEAKPLRSLAPVLPKSLQSSLSGRYPCVFPPFVVVEEAQESQPSSPAPIPAPIKSYRNPLVEEEEEEETPHGANGDTSSPMEVLDGYSQKRVPMNSCKSSQKRGRKTQESQFDSSSLVGGGIGVAQRDDGDRETVNLVLMTYDSLRRRLCQLEDAKELNTTMAIKRADLRASNALSAKAFRTNMRKRVGAVPGVEIGDIFFLRMEMVLVGLHIQSMGGIDYMTTKDETVALSIVSSGVYDDETEDNDVLVYSGQGENFNKKDKHVIDQKLQRGNLALDRSSRQQNEVRVIRGLRDAVNRSAKIYVYDGLYKIQDSWIERGKSGGGVFKYKFVRLPGQPSAIAVWKSVQKWKMDSSSRTGLILADLSRGDESVPVSLVNEVDNENCPVFNYFNSLKHQKPFSLGQSSYGCNCYKSCVPGDLSCSCIQRNEGDFPYTANAVLVSRTQLVHECGPMCKCFPNCKNRVSQTGLKHQMEVFKTKDRGWGLRSLDPIRAGTFICEYAGEVIDRAKVNPYGGYNDDYIFDTSRIYDPFKWNYEPSLLEEISSNVSSEDYAIPYPLIISSKNFGNVARFMNHSCSPNVFWQPVLYAENNQSFLHIAFFALRHIPPMAELTYDYGCSGHAEGGNAPKGRKKCLCGSSKCRGSFG 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01741 667 SUPERFAMILY PUA domain-like 194 377 IPR015947 -
Cca04g01741 667 Pfam SAD/SRA domain 210 359 IPR003105 -
Cca04g01741 667 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 15 665 - -
Cca04g01741 667 ProSiteProfiles Pre-SET domain profile. 429 490 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca04g01741 667 ProSiteProfiles Post-SET domain profile. 651 667 IPR003616 -
Cca04g01741 667 SMART set_7 493 644 IPR001214 GO:0005515
Cca04g01741 667 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 667 IPR025794 GO:0016571
Cca04g01741 667 SMART preset_2 384 477 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca04g01741 667 MobiDBLite consensus disorder prediction 27 46 - -
Cca04g01741 667 ProSiteProfiles YDG domain profile. 211 355 IPR003105 -
Cca04g01741 667 SMART G9a_1 206 359 IPR003105 -
Cca04g01741 667 Pfam Pre-SET motif 388 485 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca04g01741 667 Gene3D SET domain 377 666 IPR046341 -
Cca04g01741 667 ProSiteProfiles SET domain profile. 493 638 IPR001214 GO:0005515
Cca04g01741 667 MobiDBLite consensus disorder prediction 82 148 - -
Cca04g01741 667 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 665 - -
Cca04g01741 667 Pfam SET domain 504 638 IPR001214 GO:0005515
Cca04g01741 667 Gene3D - 193 376 IPR036987 -
Cca04g01741 667 SUPERFAMILY SET domain 393 664 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01741 Cca-Chr4 30408559 30410907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01741 16 667 Su(var)3-9 homologs AT5G04940 48.369 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca04g01741 SAD_SRA 8.5e-47 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01882 10 35695331 35699974 Cca04g01741 04 30408559 30410907 PCT