Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01740 ATGTCATTCTCTTCAATTATGGGGCTTCTCCGATTCCTTCATTTCCTCTTTGTAGTTTCTCTTCTTATCAGCACTACAGCAATTTCAGATCAAATTCCCAAGCCTTATGTTGTTTATATGGGAAATCCATCACCAAAAAACGTTGGGGTGGAAGTAGAAGGCCAAATACCAGAATCAGATCATCTGCAGCTATTGTCCTCAATCATCCCAAGAGAAGAAAGTGAGAGGATAGCTCTAATCCACCATTTCAATCATGCCTTTAGTGGATTCTCTGCCATGCTTACAGAGAGAGAAGCTTCTGCACTGTCTGGGCAGGATGGTGTGGTGTCAGTGTTCCGAGATCCAGTGGTTGAGTTACACACAACTCGATCATGGGATTTCTTAGAAACAGATTTGGGAATGAAGACTCATACCAATGCCAATGCCACTCCCACACTCCATCACTCCTCAACTGATATCATTGTGGCTCTCATAGACACAGGGATATGGCCAGAGTCTCCAAGTTTCAGAGACGAGGGTATAGGAGAGATTCCTTCAAAATGGAAAGGAGTTTGCATGGAGGGTCATGATTTCAAGAAATCCAATTGCAATAGAAAGTTGATAGGTGCAAGATACTATAATATTCAAGTTACATCAGGTGGAAACCAGACTCATATAGAAGCAACCAAGGGTTCCCCAAGAGATTCTGTTGGACATGGAACTCACACTGCATCAATAGCAGCTGGTGTTCATGTCAACAATGCTAGTTATTTTGGTTTAGCACAAGGAACAGCAAGAGGTGGTTCACCTTCTACTAGGATTGCAGCCTATAAAACATGCTCAGAAGAAGGTTGCTCTGGTGCCACCATACTAAAAGCTATTGATGATGCTGTAAACGATGGAGTAGATATAATCTCAATTTCTATTGGACTTAGCTCACTGTTCCAATCAGACTTTTTGAGTGACCCTATAGCCATTGGAGCATTTCATGCAGAACAAAAGGGGGTCATGGTGGTGTGTTCAGCTGGCAATGATGGTCCTGATCCTTTCACAGTTGTGAACACTGCACCATGGATATTTACAGTTGCAGCTTCTAATATTGATAGGAACTTCCAATCCACTATTGTCCTTGGAAATGGGAAATATTTCCAAGGTGCAGGCATTAACTTTTCTAACCTTACTCGTTCGAAGATGTATAATCTTGTCTACGGAGAGCAAGTAGCTGCCAAATTTACCCCTGCATCAGAAGCTTGGAACTGTTATCCTGGATCACTAGATAACAACAAAGTTGCAGGCAACATTGTTGTTTGTGTTAACGATGATCCAACTGTTTCAAGGCGAATCAAGAAGCTAGTTGTACAGGATGCAGGAGCCATAGGGATAATTATCATAAATGAGGAAAACAAAGATGTTCCCTTTGATGCAGGTGTATTTCCCTTCACAGAGGTTGGCAATCTTGAAGGGCATCAGATCCTAGAATACATAAACTCTACCAAGAATCCAACTGCAACAATTCTTCCAACAACAGAAATTAATAGAAATAAGCCTTCTCCAAGTGTTGCATCTTTCTCATCCAGAGGTCCTTCAAGCCTTACAGAAAACATTCTCAAGCCAGATATCATGGCTCCAGGAATTGGCATTCTGGCCGCTGTCATTCCTAAAAGTCAAGACCCAGGAAGTGTTCCAATTGGGAAAAAGCCATCCTTATATGCCATAAAATCTGGTACATCTATGGCATGCCCACATGTGACAGGTGCAGCAGCATTCATTAAATCAGTGCACAAAAATTGGAGTCCTTCAATGATCAAATCAGCATTGATGACAACAGCTACAAACTACAACAACTTGAGGAAGCCTGTTACTAACAGCTCAAACTTCTTTGCCAACCTGCATGAAATGGGAGCTGGGGAAATTAATCCACTCAGAGCTCTCAACCCTGGCTTAGTCTTTGAAACAGATGTGGAAGACTATCTCACATTCCTTTGTTACTTTGGCTATTCACAGAAAAACATAAGATCAATGTCCAAGGCTAACTACAATTGCCCAAAGAACTCTTCTGAAGACCTTATACCAACCATCAATTACCCATCAATATCCATAAGTACTCTCAAAAGACAACAGAAAGCAAAAGTAATCACGAGAACAGTTACCAATGTTGGATCCCTTAATGCCACATACACTGCAAAAGTGCGTGCACCTGAGGGATTGGTTGTGGAGGTCATCCCCAATAAACTTGTGTTTTCTGAGGGTGTTCAAAGAATAACCTACAAAGTCTCATTCTATGGCAAGGAGGCCCGTGGTGGATACAATTTTGGGTCCCTAACATGGCTTGATGGTCACCATTATgggCATTATGCAAGGACCAATTTGAGGACACCGCCGAGTTCCTTTAAACAAAGAACAAAACTAGGATCACCAGAACTAGATCCTACAAAAGATTCCTACGTCCACCATCACCAAGGATGTGGTCATCTATACAACTCAGGCTTGGAGAGGCTAGCAAATAATACTATTCAAAGATTAGAAAAGGTTGGTTGGACCCTCAAAACCAGTATAGCTTGGAGAGGCTATGCCAAGGAACACTCAAAGGTTAGCTGGACCCTCAAAACCAGTACAACTTAG 2601 0.4187 MSFSSIMGLLRFLHFLFVVSLLISTTAISDQIPKPYVVYMGNPSPKNVGVEVEGQIPESDHLQLLSSIIPREESERIALIHHFNHAFSGFSAMLTEREASALSGQDGVVSVFRDPVVELHTTRSWDFLETDLGMKTHTNANATPTLHHSSTDIIVALIDTGIWPESPSFRDEGIGEIPSKWKGVCMEGHDFKKSNCNRKLIGARYYNIQVTSGGNQTHIEATKGSPRDSVGHGTHTASIAAGVHVNNASYFGLAQGTARGGSPSTRIAAYKTCSEEGCSGATILKAIDDAVNDGVDIISISIGLSSLFQSDFLSDPIAIGAFHAEQKGVMVVCSAGNDGPDPFTVVNTAPWIFTVAASNIDRNFQSTIVLGNGKYFQGAGINFSNLTRSKMYNLVYGEQVAAKFTPASEAWNCYPGSLDNNKVAGNIVVCVNDDPTVSRRIKKLVVQDAGAIGIIIINEENKDVPFDAGVFPFTEVGNLEGHQILEYINSTKNPTATILPTTEINRNKPSPSVASFSSRGPSSLTENILKPDIMAPGIGILAAVIPKSQDPGSVPIGKKPSLYAIKSGTSMACPHVTGAAAFIKSVHKNWSPSMIKSALMTTATNYNNLRKPVTNSSNFFANLHEMGAGEINPLRALNPGLVFETDVEDYLTFLCYFGYSQKNIRSMSKANYNCPKNSSEDLIPTINYPSISISTLKRQQKAKVITRTVTNVGSLNATYTAKVRAPEGLVVEVIPNKLVFSEGVQRITYKVSFYGKEARGGYNFGSLTWLDGHHYGHYARTNLRTPPSSFKQRTKLGSPELDPTKDSYVHHHQGCGHLYNSGLERLANNTIQRLEKVGWTLKTSIAWRGYAKEHSKVSWTLKTSTT 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01740 866 PRINTS Subtilisin serine protease family (S8) signature 150 169 IPR015500 -
Cca04g01740 866 PRINTS Subtilisin serine protease family (S8) signature 567 583 IPR015500 -
Cca04g01740 866 PRINTS Subtilisin serine protease family (S8) signature 228 241 IPR015500 -
Cca04g01740 866 Gene3D - 361 505 - -
Cca04g01740 866 MobiDBLite consensus disorder prediction 783 803 - -
Cca04g01740 866 Pfam Peptidase inhibitor I9 36 120 IPR010259 -
Cca04g01740 866 CDD Peptidases_S8_3 117 604 IPR034197 -
Cca04g01740 866 ProSitePatterns Serine proteases, subtilase family, serine active site. 568 578 IPR023828 -
Cca04g01740 866 Gene3D - 654 781 - -
Cca04g01740 866 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 59 775 IPR045051 -
Cca04g01740 866 SUPERFAMILY Subtilisin-like 138 641 IPR036852 GO:0004252|GO:0006508
Cca04g01740 866 PANTHER CUCUMISIN-LIKE 59 775 - -
Cca04g01740 866 Pfam Fibronectin type-III domain 686 774 IPR041469 -
Cca04g01740 866 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 23 120 IPR037045 -
Cca04g01740 866 ProSiteProfiles Serine proteases, subtilase domain profile. 124 637 - -
Cca04g01740 866 Pfam Subtilase family 151 608 IPR000209 GO:0006508|GO:0008236
Cca04g01740 866 Pfam PA domain 404 463 IPR003137 -
Cca04g01740 866 Gene3D Peptidase S8/S53 domain 152 650 IPR036852 GO:0004252|GO:0006508
Cca04g01740 866 CDD PA_subtilisin_like 367 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01740 Cca-Chr4 30351404 30373779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01740 36 786 Subtilisin-like Serine Gene Family AT1G20150 42.987 0.0 593