Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01729 ATGGCAAGAGCAGCTTGCAATCACCTTCACTTGGTTCCCAGTTTATTTCATCCTTTGAAGTCACCCCTCTTCACAAATCACACCCTTTCCACCTCACGCACTTGCTTATATGGGATTCAGCGAAGGTTCTCTGCTTCTTCATCAAAAATAAGCATGAGCCTCAGGGCTGGTATCGTAGGCCTTCCCAACGTTGGCAAGTCCACTCTCTTCAATGCCGTCGTGGAAAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACAATAGAGCCAAATGTAGGGATTGTTGCTGTTCCAGATTCTCGTCTCCATGTGCTATCAGATCTCAGCAAATCTCAACGAGCAGTTCCAGCATCAATAGAATTTGTAGATATTGCTGGGCTTGTCAAGGGTGCAAGTCAAGGCGAGGGGTTGGGTAATAAGTTTTTGTCACATATTCGTGAGGTGGACTCCATACTTCAGGTTGTACGGTGTTTTGAAGACAATGACATTGTTCACGTGAACGGGAAAGTTGACCCCAAGTCTGATATTGACGTTATCAATTTGGAGCTTGTTTTCTCAGATTTGGACCAGATTGATAAAAGAATGGATAAACTAAAGAAAGGCAAGGCAAGGGATTCACAATCTAAACTCAAGGAAGAGGCAGAAAAGACTGCATTGGAAAAGATTCAGGAGGCGCTTATGGATGGAAAACCTGCCCGATCGGTGATCTTAACAGATTTTGAAAGGGATGCTGTGAAGCATCTCTGCTTGCTCACCATGAAACCTGTTATATATGTGGCAAATGTTGCAGAATCTGATGTAGCTGATCCTGCAAACAATAATTATGTCAAGGATGTTACGAATGTTGCATCTGAGTTGCAGTCTGGAATTGTAACAATTTCAGCACAGGTTGAGGCAGAGCTTACTGAACTACCAACTGAAGAACGACAAGAATATTTGCAATCTCTTGGTGTTAGTGAAAGTGGTCTTGGTAACCTAATTAGAGCAACTTATGAACTTTTGGGGCTGCGAACTTACTTTACTTCTGGTGAGAAGCTTCGTGTTGTACTAGGAATGACTGCACCACAAGCTGCTGGAGTTATTCACTCTGACTTTGAGAAGGGTTTCATTCGAGCAGAGACAGTGTCTTATGATGATTTTGTGTCTGCTGGTTCACTTGCTGCGGCACGAGAGAAAGGACTGTTAAGGTCCGAAGGTAAAGACTATGTTGTACAAGAAGGAGATGTAATGTTGTTTCGGTTCAATGTTTAG 1254 0.429 MARAACNHLHLVPSLFHPLKSPLFTNHTLSTSRTCLYGIQRRFSASSSKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDIDVINLELVFSDLDQIDKRMDKLKKGKARDSQSKLKEEAEKTALEKIQEALMDGKPARSVILTDFERDAVKHLCLLTMKPVIYVANVAESDVADPANNNYVKDVTNVASELQSGIVTISAQVEAELTELPTEERQEYLQSLGVSESGLGNLIRATYELLGLRTYFTSGEKLRVVLGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVSAGSLAAAREKGLLRSEGKDYVVQEGDVMLFRFNV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01729 417 PRINTS GTP1/OBG GTP-binding protein family signature 139 157 IPR006073 GO:0005525
Cca04g01729 417 PRINTS GTP1/OBG GTP-binding protein family signature 122 137 IPR006073 GO:0005525
Cca04g01729 417 PRINTS GTP1/OBG GTP-binding protein family signature 56 76 IPR006073 GO:0005525
Cca04g01729 417 PRINTS GTP1/OBG GTP-binding protein family signature 78 96 IPR006073 GO:0005525
Cca04g01729 417 TIGRFAM TIGR00092: GTP-binding protein YchF 52 417 IPR004396 GO:0005524|GO:0005525|GO:0016887
Cca04g01729 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 346 IPR027417 -
Cca04g01729 417 Gene3D - 54 336 IPR027417 -
Cca04g01729 417 PANTHER OBG GTPASE FAMILY 52 417 - -
Cca04g01729 417 CDD TGS_YchF_OLA1 335 415 IPR013029 -
Cca04g01729 417 CDD YchF 56 335 IPR041706 -
Cca04g01729 417 Pfam 50S ribosome-binding GTPase 56 168 IPR006073 GO:0005525
Cca04g01729 417 Hamap Ribosome-binding ATPase YchF [ychF]. 53 417 IPR004396 GO:0005524|GO:0005525|GO:0016887
Cca04g01729 417 PIRSF EngD 51 417 IPR004396 GO:0005524|GO:0005525|GO:0016887
Cca04g01729 417 PANTHER OBG-LIKE ATPASE 1 52 417 - -
Cca04g01729 417 SUPERFAMILY TGS-like 337 417 IPR012676 -
Cca04g01729 417 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 54 336 IPR031167 GO:0005525
Cca04g01729 417 Gene3D - 100 416 IPR012675 -
Cca04g01729 417 Pfam Protein of unknown function (DUF933) 337 416 IPR013029 -
Cca04g01729 417 Gene3D - 165 255 IPR023192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01729 Cca-Chr4 29781117 29799435 Dispersed